Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RF667_RS00840 | Genome accession | NZ_CP133786 |
| Coordinates | 141142..141585 (+) | Length | 147 a.a. |
| NCBI ID | WP_194959150.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus paracasei strain KCKM 0245 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 133032..177990 | 141142..141585 | within | 0 |
Gene organization within MGE regions
Location: 133032..177990
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RF667_RS00770 (RF667_00770) | - | 133032..134201 (-) | 1170 | WP_194959139.1 | site-specific integrase | - |
| RF667_RS00775 (RF667_00775) | - | 134376..135008 (-) | 633 | WP_228768588.1 | hypothetical protein | - |
| RF667_RS00780 (RF667_00780) | - | 135065..135835 (-) | 771 | WP_228768607.1 | XRE family transcriptional regulator | - |
| RF667_RS00785 (RF667_00785) | - | 136036..136275 (+) | 240 | WP_194959141.1 | helix-turn-helix transcriptional regulator | - |
| RF667_RS00790 (RF667_00790) | - | 136310..137128 (+) | 819 | WP_194959142.1 | ORF6N domain-containing protein | - |
| RF667_RS00795 (RF667_00795) | - | 137125..137274 (+) | 150 | WP_021354148.1 | hypothetical protein | - |
| RF667_RS00800 (RF667_00800) | - | 137340..137564 (+) | 225 | WP_194959143.1 | hypothetical protein | - |
| RF667_RS00805 (RF667_00805) | - | 137548..138039 (-) | 492 | WP_211772729.1 | DUF2321 domain-containing protein | - |
| RF667_RS00810 (RF667_00810) | - | 138101..138424 (+) | 324 | WP_194959145.1 | DUF771 domain-containing protein | - |
| RF667_RS00815 (RF667_00815) | - | 138506..138658 (+) | 153 | WP_016375940.1 | hypothetical protein | - |
| RF667_RS00820 (RF667_00820) | - | 138663..138866 (+) | 204 | WP_194959146.1 | hypothetical protein | - |
| RF667_RS00825 (RF667_00825) | - | 138884..139771 (+) | 888 | WP_194959147.1 | DUF1351 domain-containing protein | - |
| RF667_RS00830 (RF667_00830) | - | 139768..140484 (+) | 717 | WP_249322084.1 | ERF family protein | - |
| RF667_RS00835 (RF667_00835) | - | 140459..141127 (+) | 669 | WP_194959149.1 | putative HNHc nuclease | - |
| RF667_RS00840 (RF667_00840) | ssb | 141142..141585 (+) | 444 | WP_194959150.1 | single-stranded DNA-binding protein | Machinery gene |
| RF667_RS00845 (RF667_00845) | - | 141600..142397 (+) | 798 | WP_194959151.1 | replication protein | - |
| RF667_RS00850 (RF667_00850) | - | 142384..143166 (+) | 783 | WP_194959152.1 | ATP-binding protein | - |
| RF667_RS00855 (RF667_00855) | - | 143163..143495 (+) | 333 | WP_194959153.1 | hypothetical protein | - |
| RF667_RS00860 (RF667_00860) | - | 143492..143830 (+) | 339 | WP_194959257.1 | hypothetical protein | - |
| RF667_RS00865 (RF667_00865) | - | 143942..144157 (+) | 216 | WP_004562022.1 | helix-turn-helix transcriptional regulator | - |
| RF667_RS00870 (RF667_00870) | - | 144154..144603 (+) | 450 | WP_194959154.1 | hypothetical protein | - |
| RF667_RS00875 (RF667_00875) | - | 144606..144989 (+) | 384 | WP_194959155.1 | DUF1064 domain-containing protein | - |
| RF667_RS00880 (RF667_00880) | - | 145001..145711 (+) | 711 | WP_194959156.1 | N-6 DNA methylase | - |
| RF667_RS00885 (RF667_00885) | - | 145698..146621 (+) | 924 | WP_194959157.1 | site-specific integrase | - |
| RF667_RS00890 (RF667_00890) | - | 146632..147210 (+) | 579 | WP_194959158.1 | hypothetical protein | - |
| RF667_RS00895 (RF667_00895) | - | 147234..147344 (+) | 111 | WP_005686930.1 | hypothetical protein | - |
| RF667_RS00900 (RF667_00900) | - | 147341..147895 (+) | 555 | WP_194959159.1 | DUF1642 domain-containing protein | - |
| RF667_RS00905 (RF667_00905) | - | 147885..148097 (+) | 213 | WP_194959160.1 | hypothetical protein | - |
| RF667_RS00910 (RF667_00910) | - | 148090..148296 (+) | 207 | WP_032799897.1 | hypothetical protein | - |
| RF667_RS00915 (RF667_00915) | - | 148293..148679 (+) | 387 | WP_194959161.1 | hypothetical protein | - |
| RF667_RS00920 (RF667_00920) | - | 148676..149188 (+) | 513 | WP_194959162.1 | hypothetical protein | - |
| RF667_RS00925 (RF667_00925) | - | 149185..149616 (+) | 432 | WP_194959163.1 | YopX family protein | - |
| RF667_RS00930 (RF667_00930) | - | 149603..149821 (+) | 219 | WP_194959164.1 | hypothetical protein | - |
| RF667_RS00935 (RF667_00935) | - | 149823..150041 (+) | 219 | WP_194959244.1 | helix-turn-helix domain-containing protein | - |
| RF667_RS00940 (RF667_00940) | - | 150115..150543 (+) | 429 | WP_096835937.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| RF667_RS00950 (RF667_00950) | - | 150900..152048 (+) | 1149 | WP_194959165.1 | GcrA family cell cycle regulator | - |
| RF667_RS00955 (RF667_00955) | - | 152041..153024 (+) | 984 | WP_194959166.1 | adenine-specific methyltransferase EcoRI family protein | - |
| RF667_RS00960 (RF667_00960) | - | 153017..153340 (+) | 324 | WP_194959167.1 | ribonucleoside-diphosphate reductase | - |
| RF667_RS00965 (RF667_00965) | - | 153343..153666 (+) | 324 | WP_194959168.1 | hypothetical protein | - |
| RF667_RS00970 (RF667_00970) | - | 153700..153951 (+) | 252 | Protein_157 | hypothetical protein | - |
| RF667_RS00975 (RF667_00975) | - | 153941..154735 (+) | 795 | WP_194959169.1 | HNH endonuclease | - |
| RF667_RS00980 (RF667_00980) | - | 154936..155367 (+) | 432 | WP_194959170.1 | P27 family phage terminase small subunit | - |
| RF667_RS01000 (RF667_01000) | - | 157993..159705 (+) | 1713 | WP_194959173.1 | terminase large subunit | - |
| RF667_RS01005 (RF667_01005) | - | 159717..159908 (+) | 192 | WP_003661399.1 | hypothetical protein | - |
| RF667_RS01010 (RF667_01010) | - | 159914..161167 (+) | 1254 | WP_194959174.1 | phage portal protein | - |
| RF667_RS01015 (RF667_01015) | - | 161121..161750 (+) | 630 | WP_194959175.1 | HK97 family phage prohead protease | - |
| RF667_RS01020 (RF667_01020) | - | 161792..162994 (+) | 1203 | WP_194959176.1 | phage major capsid protein | - |
| RF667_RS01025 (RF667_01025) | - | 163012..163251 (+) | 240 | WP_005712764.1 | Ig-like domain-containing protein | - |
| RF667_RS01030 (RF667_01030) | - | 163262..163621 (+) | 360 | WP_016377451.1 | head-tail connector protein | - |
| RF667_RS01035 (RF667_01035) | - | 163611..163940 (+) | 330 | WP_003661388.1 | head-tail adaptor protein | - |
| RF667_RS01040 (RF667_01040) | - | 163940..164326 (+) | 387 | WP_194959177.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| RF667_RS01045 (RF667_01045) | - | 164326..164712 (+) | 387 | WP_016363186.1 | hypothetical protein | - |
| RF667_RS01050 (RF667_01050) | - | 164746..165363 (+) | 618 | WP_194958563.1 | major tail protein | - |
| RF667_RS01055 (RF667_01055) | gpG | 165462..165875 (+) | 414 | WP_101512059.1 | phage tail assembly chaperone G | - |
| RF667_RS01060 (RF667_01060) | - | 165998..170839 (+) | 4842 | WP_194959178.1 | phage tail tape measure protein | - |
| RF667_RS01065 (RF667_01065) | - | 170840..173119 (+) | 2280 | WP_194959179.1 | distal tail protein Dit | - |
| RF667_RS01070 (RF667_01070) | - | 173125..175578 (+) | 2454 | WP_194959180.1 | phage tail protein | - |
| RF667_RS01075 (RF667_01075) | - | 175588..175911 (+) | 324 | WP_003573796.1 | hypothetical protein | - |
| RF667_RS01080 (RF667_01080) | - | 175973..176035 (+) | 63 | WP_225424246.1 | hypothetical protein | - |
| RF667_RS01085 (RF667_01085) | - | 176066..176356 (+) | 291 | WP_003573802.1 | hypothetical protein | - |
| RF667_RS01090 (RF667_01090) | - | 176349..176795 (+) | 447 | WP_003573804.1 | phage holin | - |
| RF667_RS01095 (RF667_01095) | - | 176806..177990 (+) | 1185 | WP_194959181.1 | GH25 family lysozyme | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 16151.84 Da Isoelectric Point: 5.1237
>NTDB_id=876818 RF667_RS00840 WP_194959150.1 141142..141585(+) (ssb) [Lacticaseibacillus paracasei strain KCKM 0245]
MLNSVALTGRLTKPVDLRYTQSGTAVGSFTIAVDRQFRSANGERETDFINCAIWRKSAENFANFTHKGSLVGIEGHIQTR
TYDNAQGQRVYVTEVIVENFALLEPKGSSQGQPTQPTNQGYVGNQPANYTQPPASQPIDISDDDLPF
MLNSVALTGRLTKPVDLRYTQSGTAVGSFTIAVDRQFRSANGERETDFINCAIWRKSAENFANFTHKGSLVGIEGHIQTR
TYDNAQGQRVYVTEVIVENFALLEPKGSSQGQPTQPTNQGYVGNQPANYTQPPASQPIDISDDDLPF
Nucleotide
Download Length: 444 bp
>NTDB_id=876818 RF667_RS00840 WP_194959150.1 141142..141585(+) (ssb) [Lacticaseibacillus paracasei strain KCKM 0245]
ATGCTTAATTCAGTTGCTTTAACAGGCAGATTAACTAAACCGGTTGATCTTCGCTATACGCAAAGTGGAACAGCAGTTGG
CTCATTTACTATTGCTGTTGATCGCCAATTTCGTAGCGCAAATGGGGAACGTGAAACTGACTTCATCAATTGTGCCATCT
GGCGTAAGTCTGCTGAGAATTTTGCCAACTTCACACATAAGGGTTCACTTGTTGGCATCGAAGGCCATATCCAAACGCGT
ACGTACGACAACGCACAGGGTCAACGAGTCTATGTGACCGAAGTCATCGTTGAGAATTTTGCGCTCTTGGAGCCTAAAGG
TTCATCGCAGGGACAACCAACTCAGCCGACTAATCAAGGATATGTGGGTAATCAACCAGCCAATTACACTCAACCGCCAG
CTAGTCAGCCAATCGATATCAGCGATGATGATCTTCCATTCTGA
ATGCTTAATTCAGTTGCTTTAACAGGCAGATTAACTAAACCGGTTGATCTTCGCTATACGCAAAGTGGAACAGCAGTTGG
CTCATTTACTATTGCTGTTGATCGCCAATTTCGTAGCGCAAATGGGGAACGTGAAACTGACTTCATCAATTGTGCCATCT
GGCGTAAGTCTGCTGAGAATTTTGCCAACTTCACACATAAGGGTTCACTTGTTGGCATCGAAGGCCATATCCAAACGCGT
ACGTACGACAACGCACAGGGTCAACGAGTCTATGTGACCGAAGTCATCGTTGAGAATTTTGCGCTCTTGGAGCCTAAAGG
TTCATCGCAGGGACAACCAACTCAGCCGACTAATCAAGGATATGTGGGTAATCAACCAGCCAATTACACTCAACCGCCAG
CTAGTCAGCCAATCGATATCAGCGATGATGATCTTCCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.294 |
100 |
0.639 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.588 |
100 |
0.585 |
| ssb | Vibrio cholerae strain A1552 |
33.721 |
100 |
0.395 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.717 |
72.109 |
0.395 |
| ssb | Glaesserella parasuis strain SC1401 |
30.556 |
100 |
0.374 |