Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RHM55_RS16880 Genome accession   NZ_CP133784
Coordinates   3605293..3606357 (+) Length   354 a.a.
NCBI ID   WP_322177452.1    Uniprot ID   -
Organism   Pseudomonas sp. MH9.2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3600293..3611357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM55_RS16870 (RHM55_16870) - 3601249..3602517 (+) 1269 WP_322177450.1 malic enzyme-like NAD(P)-binding protein -
  RHM55_RS16875 (RHM55_16875) - 3602639..3605083 (-) 2445 WP_407074652.1 penicillin-binding protein 1A -
  RHM55_RS16880 (RHM55_16880) comM 3605293..3606357 (+) 1065 WP_322177452.1 pilus assembly protein PilM Machinery gene
  RHM55_RS16885 (RHM55_16885) - 3606357..3606923 (+) 567 WP_322177453.1 PilN domain-containing protein -
  RHM55_RS16890 (RHM55_16890) pilO 3606920..3607543 (+) 624 WP_322177454.1 type 4a pilus biogenesis protein PilO -
  RHM55_RS16895 (RHM55_16895) - 3607540..3608079 (+) 540 WP_322177455.1 pilus assembly protein PilP -
  RHM55_RS16900 (RHM55_16900) pilQ 3608190..3610277 (+) 2088 WP_322177456.1 type IV pilus secretin PilQ Machinery gene
  RHM55_RS16905 (RHM55_16905) aroK 3610282..3610800 (+) 519 WP_322177457.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38023.45 Da        Isoelectric Point: 4.6219

>NTDB_id=876788 RHM55_RS16880 WP_322177452.1 3605293..3606357(+) (comM) [Pseudomonas sp. MH9.2]
MFELFSKKANTLLGIDISSTSVKLLELSRSGTRYKVESYAVEPLPANAVVEKNIADLDGVGQALSRVLVKAKTHVKSVAV
AVAGSAVITKTIEMDAGLSDDDMESQLKIEADQYIPYPLEEVAIDFEVQGYSARNPERVEVLLAACRKENVEVREAALAL
AGLNAKVVDVEAYALERAFGLLAAQLGNDHEQLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLAV
EEAGLAKKQGGLPDDYVSEVLQPFKDAVVQQVTRSLQFFFAAGQYNTVDYIMLAGGTSSLAGLDHLIQQRLGTPTLVANP
FADMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=876788 RHM55_RS16880 WP_322177452.1 3605293..3606357(+) (comM) [Pseudomonas sp. MH9.2]
GTGTTCGAACTCTTCAGTAAGAAGGCCAATACCCTTCTAGGGATCGATATTAGCTCCACCTCGGTAAAACTCCTTGAATT
GAGTCGTTCCGGCACTCGCTACAAAGTTGAGTCCTACGCGGTCGAACCGCTACCCGCCAACGCTGTAGTCGAAAAAAATA
TCGCCGATCTCGACGGGGTCGGTCAGGCATTGTCACGGGTGTTGGTCAAGGCCAAGACTCATGTCAAAAGCGTCGCCGTG
GCAGTGGCCGGCTCTGCCGTGATCACCAAGACCATCGAGATGGACGCTGGCCTGTCGGACGATGACATGGAAAGTCAGCT
CAAGATTGAAGCTGATCAGTACATTCCGTATCCCCTTGAAGAAGTCGCCATCGATTTTGAAGTGCAGGGTTACTCGGCGC
GCAACCCCGAGCGCGTTGAAGTCCTGCTCGCCGCCTGCCGCAAGGAAAACGTAGAGGTTCGCGAAGCCGCCCTGGCGCTG
GCGGGCCTCAATGCCAAGGTCGTGGATGTCGAAGCGTATGCGTTGGAGCGCGCCTTCGGCCTGCTTGCTGCGCAGTTGGG
CAACGATCACGAGCAGCTGACCGTGGCGGTGGTCGACATCGGCGCCACCATGACTACTTTGAGCGTGCTGCACAACGGTC
GGATTATTTATACCCGCGAACAATTGTTCGGCGGCCGGCAACTGACTGAAGAAATTCAGCGTCGTTATGGTCTGGCGGTA
GAAGAAGCGGGCCTGGCGAAAAAACAGGGCGGTCTGCCGGATGACTATGTCAGCGAGGTGCTGCAGCCGTTCAAGGATGC
CGTGGTTCAGCAAGTTACCCGCTCGTTGCAGTTCTTTTTTGCGGCCGGTCAGTACAACACCGTGGATTACATCATGCTGG
CGGGTGGTACCTCTTCGCTTGCAGGCCTGGACCATTTGATTCAGCAACGTCTGGGCACGCCCACGCTGGTGGCCAATCCG
TTCGCCGACATGGCGCTAAGTAGCAAGGTCAACGCGGGGGCGCTGGCCAGTGATGCTCCGGCCTTGATGATTGCCTGTGG
TCTGGCGTTAAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.215

100

0.562
  pilM Acinetobacter baumannii D1279779

56.215

100

0.562
  comM Acinetobacter baylyi ADP1

52.542

100

0.525
  pilM Legionella pneumophila strain ERS1305867

47.458

100

0.475