Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RHM55_RS14060 Genome accession   NZ_CP133784
Coordinates   2979699..2981192 (+) Length   497 a.a.
NCBI ID   WP_322176982.1    Uniprot ID   -
Organism   Pseudomonas sp. MH9.2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2974699..2986192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM55_RS14030 (RHM55_14030) - 2975330..2976022 (+) 693 WP_322176978.1 HAD family hydrolase -
  RHM55_RS14035 (RHM55_14035) - 2976090..2976416 (-) 327 WP_219063024.1 hypothetical protein -
  RHM55_RS14040 (RHM55_14040) - 2976517..2976942 (-) 426 WP_322176979.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RHM55_RS14045 (RHM55_14045) - 2977121..2978461 (-) 1341 WP_322176980.1 ammonium transporter -
  RHM55_RS14050 (RHM55_14050) glnK 2978496..2978834 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  RHM55_RS14055 (RHM55_14055) - 2979254..2979514 (+) 261 WP_322176981.1 accessory factor UbiK family protein -
  RHM55_RS14060 (RHM55_14060) comM 2979699..2981192 (+) 1494 WP_322176982.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RHM55_RS14065 (RHM55_14065) - 2981381..2983357 (-) 1977 WP_322176983.1 methyl-accepting chemotaxis protein -
  RHM55_RS14070 (RHM55_14070) - 2983549..2984469 (-) 921 WP_322176984.1 LysR substrate-binding domain-containing protein -
  RHM55_RS14075 (RHM55_14075) - 2984650..2986032 (+) 1383 WP_322182940.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52842.58 Da        Isoelectric Point: 7.5231

>NTDB_id=876784 RHM55_RS14060 WP_322176982.1 2979699..2981192(+) (comM) [Pseudomonas sp. MH9.2]
MSLAIVLSRAQVGVEAPAVTVECHLANGLPALTLVGLPEGAVRESKDRVRSAILNSGLEYPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQLPAHALQDVECLGELALSGAIRPIQGVLPAALAARAEGHTLIVPAANAEEACLASGLRVIAVNHL
LELVAHFNGRAPIVPYESSGLLHLSKPYPDLSEVQGQTAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASQSPLTSWPQRPFRQPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCRCSTEQIQRYRNKLSGPLLDRIDLHLTVAREATALNPTPQT
GDDTASAAALVAQARERQQRRQGCANAFLDLPGLRKHCSLSSADENWLETACERLTLSLRAAHRLLKVARTLADLEQVDA
IGRSHLAEALQYRPSSN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=876784 RHM55_RS14060 WP_322176982.1 2979699..2981192(+) (comM) [Pseudomonas sp. MH9.2]
ATGTCTCTCGCCATCGTGCTCAGTCGCGCTCAGGTGGGTGTGGAAGCGCCAGCCGTCACTGTCGAGTGCCATCTGGCCAA
CGGGCTTCCCGCGCTGACGCTGGTGGGCTTGCCTGAAGGCGCAGTCAGGGAAAGCAAGGATCGGGTCCGCAGTGCCATCC
TCAATTCCGGCCTCGAATACCCTGCCCGCAGAATTACCCTCAACCTCGCGCCAGCCGACCTGCCCAAAGACGGTGGGCGT
TTCGATCTGGCGATTGCCCTGGGTTTGCTCGCCGCCAGTGGGCAACTGCCTGCTCACGCGTTACAGGATGTCGAATGCCT
GGGTGAATTGGCGCTCTCGGGCGCTATAAGGCCGATACAGGGCGTCTTGCCTGCCGCACTGGCTGCTCGTGCCGAGGGCC
ATACGTTGATCGTGCCCGCGGCCAATGCCGAAGAGGCGTGTCTGGCGTCCGGGTTGCGGGTGATTGCAGTCAATCATCTG
CTGGAGCTGGTGGCACACTTCAATGGCCGGGCCCCGATTGTCCCCTACGAATCCAGCGGCCTGCTGCACCTGAGCAAACC
CTATCCAGACTTGAGCGAGGTGCAAGGCCAGACCGCCGCCAAACGCGCATTGCTGGTGGCGGCGGCGGGCGCGCACAATC
TGCTTTTCAGTGGGCCTCCCGGCACCGGCAAGACGCTCCTTGCCAGCCGTCTGCCAGGCCTGTTGCCGCCACTGGATGAA
CATGAAGCTCTGGAGGTCGCCGCAATTCAGTCGGTCGCCAGCCAGAGTCCTCTGACCAGTTGGCCACAGCGGCCCTTTCG
GCAGCCCCACCATTCCGCCTCAGGTGCCGCGCTGGTGGGTGGCGGCAGTCGTCCGCAACCCGGCGAAATCACCCTTGCCC
ACCATGGCGTGCTGTTTCTCGATGAGCTGCCCGAGTTTGATCGCAAAGTGCTGGAGGTGCTGCGTGAGCCACTGGAGTCC
GGGCACATCGTCATTGCCAGAGCCCGCGACCGGGTACGCTTCCCGGCGCGCTTTCAGTTGGTGGCCGCGATGAACCCCTG
CCCTTGCGGCTATCTGGGCGAGCCCAGCGGTCGCTGTCGTTGTTCCACCGAGCAGATTCAGCGCTACCGCAACAAGCTTT
CCGGCCCGCTGCTGGATCGCATCGACCTGCACCTGACCGTAGCCCGCGAAGCCACGGCACTCAACCCCACCCCGCAAACC
GGCGACGACACCGCCAGCGCCGCCGCCCTCGTGGCCCAGGCCCGCGAGCGGCAACAACGGCGCCAAGGCTGCGCCAACGC
CTTTCTCGACCTACCGGGCCTGCGCAAACACTGCTCGCTGTCCAGCGCCGACGAAAACTGGCTGGAAACCGCCTGCGAGC
GTTTGACCCTGTCACTCAGGGCCGCACACCGCTTGTTGAAAGTGGCAAGAACGCTGGCTGATCTGGAACAGGTCGATGCG
ATTGGGCGCAGCCATCTGGCCGAGGCGTTGCAGTATCGGCCGTCGAGTAATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.343

99.598

0.541
  comM Haemophilus influenzae Rd KW20

53.6

100

0.539
  comM Vibrio campbellii strain DS40M4

54.032

99.799

0.539
  comM Glaesserella parasuis strain SC1401

53

100

0.533
  comM Legionella pneumophila str. Paris

48.387

99.799

0.483
  comM Legionella pneumophila strain ERS1305867

48.387

99.799

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.467