Detailed information NTG0876732

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: RHM68_RS24810
• Genome accession: NZ_CP133782
• Coordinates: 5440443..5441936 (+)
• Length: 497 a.a.
• NCBI ID: WP_322219619.1
• Uniprot ID: -
• Organism: Pseudomonas sp. DC1.2
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 5435443..5446936

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHM68_RS24780 (RHM68_24780)	-	5435875..5436582 (+)	708	WP_322219614.1	HAD-IA family hydrolase	-
RHM68_RS24785 (RHM68_24785)	sutA	5436768..5437091 (-)	324	WP_322219615.1	transcriptional regulator SutA	-
RHM68_RS24790 (RHM68_24790)	-	5437194..5437619 (-)	426	WP_322219616.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
RHM68_RS24795 (RHM68_24795)	-	5437835..5439172 (-)	1338	WP_322219617.1	ammonium transporter	-
RHM68_RS24800 (RHM68_24800)	glnK	5439208..5439546 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
RHM68_RS24805 (RHM68_24805)	-	5439960..5440226 (+)	267	WP_322219618.1	accessory factor UbiK family protein	-
RHM68_RS24810 (RHM68_24810)	comM	5440443..5441936 (+)	1494	WP_322219619.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
RHM68_RS24815 (RHM68_24815)	-	5441943..5443157 (-)	1215	WP_322219620.1	aldose 1-epimerase family protein	-
RHM68_RS24820 (RHM68_24820)	-	5443172..5443411 (+)	240	WP_322219621.1	hypothetical protein	-
RHM68_RS24825 (RHM68_24825)	-	5443531..5445507 (-)	1977	WP_322219622.1	methyl-accepting chemotaxis protein	-
RHM68_RS24830 (RHM68_24830)	-	5445694..5446614 (-)	921	WP_322219623.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 52997.02 Da
• Isoelectric Point: 8.0531

>NTDB_id=876732 RHM68_RS24810 WP_322219619.1 5440443..5441936(+) (comM) [Pseudomonas sp. DC1.2]
MSLAIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAAREAGRSLMVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPYVSNGLLYASKPYPDLSEVQGQPAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
NEALEVAAIQSVASCVPLSHWPQRPFRHPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDRVKFPARFQLVAAMNPCPCGYLGEPSGRCSCSSDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPTSKP
GDDTATASLLVANARERQHQRQGCANAFLDLPGLRRHCTLSTVDERWLESACERLTLSLRAAHRLLKVARTLADLEQVDG
ITRKHLAEALQYRPTAN

Nucleotide

• Length: 1494 bp

>NTDB_id=876732 RHM68_RS24810 WP_322219619.1 5440443..5441936(+) (comM) [Pseudomonas sp. DC1.2]
ATGTCTCTCGCCATTGTCCATAGTCGCGCACAGATTGGCGTGGATGCGCCCGCCGTTACCGTAGAAGTCCATCTGGCGAA
CGGGCTGCCGTCACTGACGATGGTCGGCTTGCCTGAAGCAGCCGTGAAGGAAAGCAAGGACCGGGTACGCAGCGCAATCA
TCAATTCTGGTCTGCAATTTCCGGCGCGGCGCATCACGTTGAATCTCGCCCCGGCGGACTTGCCCAAGGATGGTGGGCGG
TTTGATCTGGCGATTGCCCTGGGGATTTTGTCGGCCAGTGTGCAGGTGCCGACATTGACCCTGGACGATGTGGAGTGTTT
GGGAGAGTTGGCGCTCTCAGGCGCAGTGCGGGCAGTCCGAGGGGTATTGCCGGCCGCGCTGGCCGCGCGCGAGGCCGGGC
GCTCATTGATGGTGCCACGCGCCAATGCCGAAGAAGCGTGCCTGGCGTCGGGGCTGAAGGTGATCGCAGTGGATCACTTG
CTGGAGGCGGTCGCACACTTCAACGGCCATACGCCCGTCGAACCCTATGTGTCCAACGGCTTGCTCTACGCCAGCAAACC
TTATCCCGACCTAAGCGAAGTGCAGGGCCAACCTGCGGCAAAACGGGCCTTGTTGATCGCAGCAGCCGGGGCGCATAACT
TGCTGTTCAGCGGGCCGCCGGGGACGGGTAAAACCCTGCTGGCCAGTCGTTTACCGGGGCTATTGCCGCCGTTGGCCGAG
AATGAAGCACTGGAAGTTGCGGCGATTCAATCGGTCGCCAGTTGTGTGCCTCTGAGCCATTGGCCGCAGCGACCGTTTCG
GCACCCACACCATTCTGCCTCTGGCCCGGCACTGGTGGGCGGCGGCTCAAAACCGCAACCCGGCGAAATTACCCTGGCCC
ATCATGGCGTCCTGTTCCTGGACGAACTCCCCGAGTTTGATCGTAAAGTTCTGGAGGTTTTAAGAGAGCCTTTGGAGTCT
GGCCACATCGTGATAGCCAGAGCCAGGGACCGCGTAAAATTCCCGGCACGCTTCCAGTTGGTGGCTGCAATGAACCCATG
CCCCTGTGGATATCTTGGTGAGCCGAGTGGCCGCTGCAGTTGTTCGTCGGACATGGTCCAGCGTTACCGCAACAAACTGT
CAGGGCCCCTGCTCGATCGAATAGATTTGCACTTGACCGTTGCCCGCGAGGCAACGGCATTAAATCCGACATCCAAGCCC
GGCGACGACACTGCCACCGCCTCGCTACTGGTCGCCAACGCCCGAGAGCGGCAACACCAACGCCAGGGTTGCGCCAATGC
GTTTCTTGACCTTCCCGGCCTGCGTCGCCACTGCACGTTATCCACAGTCGATGAGCGCTGGCTGGAATCCGCTTGCGAGC
GACTGACACTGTCATTACGCGCCGCCCATCGACTGCTCAAGGTGGCACGTACCCTGGCTGACCTTGAGCAAGTCGATGGG
ATAACCCGTAAACATCTGGCCGAAGCGTTGCAATATCGACCCACCGCCAACTGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (404-493)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	54.747	99.598	0.545
comM	Vibrio campbellii strain DS40M4	54.343	99.598	0.541
comM	Haemophilus influenzae Rd KW20	53.307	100	0.535
comM	Glaesserella parasuis strain SC1401	52.8	100	0.531
comM	Legionella pneumophila str. Paris	49.799	100	0.499
comM	Legionella pneumophila strain ERS1305867	49.799	100	0.499
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.924	100	0.465