Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RHM61_RS05415 Genome accession   NZ_CP133779
Coordinates   1176753..1178267 (+) Length   504 a.a.
NCBI ID   WP_322250116.1    Uniprot ID   A0AAU0SCS1
Organism   Undibacterium sp. CCC3.4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1171753..1183267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM61_RS05395 (RHM61_05395) - 1173335..1174909 (-) 1575 WP_322250112.1 ammonium transporter -
  RHM61_RS05400 (RHM61_05400) - 1174932..1175270 (-) 339 WP_322250113.1 P-II family nitrogen regulator -
  RHM61_RS05405 (RHM61_05405) - 1175286..1176035 (-) 750 WP_322250114.1 TorF family putative porin -
  RHM61_RS05410 (RHM61_05410) - 1176499..1176741 (+) 243 WP_322250115.1 accessory factor UbiK family protein -
  RHM61_RS05415 (RHM61_05415) comM 1176753..1178267 (+) 1515 WP_322250116.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RHM61_RS05420 (RHM61_05420) - 1178357..1179043 (+) 687 WP_322250117.1 DUF2076 family protein -
  RHM61_RS05425 (RHM61_05425) - 1179177..1180769 (+) 1593 WP_322250118.1 DUF1800 domain-containing protein -
  RHM61_RS05430 (RHM61_05430) - 1180818..1182020 (+) 1203 WP_322250119.1 DUF1501 domain-containing protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53551.58 Da        Isoelectric Point: 8.8590

>NTDB_id=876689 RHM61_RS05415 WP_322250116.1 1176753..1178267(+) (comM) [Undibacterium sp. CCC3.4]
MSLAVLKSRALHGIDAPQVTVEVHLANGIPAFTIVGLPETEVKEAKDRVRAALQTARFDFPAKRITVNLAPADLPKESGR
FDLPIALGILAASEQIPAGGLARYEFAGELSLSGALRPIRGALAMTSAIWRGSGAAAALILPRANADEAALVAAAAIYPA
DSLLQVCAHFAADEKAPRLQRHVASPQTQAPHYPDFSDIKAQLGAKRACEVAAAGRHALLMCGPPGSGKTMLATRIPGIL
PAMSETEAIETAALQSLSTGFTLANWKVRPFRAPHHTASAAALVGGGSNPRPGEISLAHHGILFLDELPEFGRRVLEVLR
QPLETGHVSIARAAMHAEFPARFQLLAAMNPCPCGYFGDPNGQCRCTPQNIARYQSKISGPLLDRIDLQIEVAAVAPADL
LTAAASESSATMAQRVAAAYTRQIQRQGKANQFLDNREIDQLCQANAAGMALLQQAISQFHWSARASHRVLKVARTIADL
AGLEQINAAHIAEAIQYRRVLGKH

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=876689 RHM61_RS05415 WP_322250116.1 1176753..1178267(+) (comM) [Undibacterium sp. CCC3.4]
ATGTCGCTCGCGGTACTCAAAAGTCGCGCTCTGCATGGTATTGATGCCCCACAGGTAACGGTGGAGGTGCATCTGGCCAA
CGGTATCCCGGCGTTTACCATCGTCGGACTGCCCGAGACCGAAGTCAAGGAAGCCAAAGACCGTGTCCGAGCGGCGCTGC
AGACGGCGCGTTTCGATTTTCCCGCCAAGCGCATCACGGTTAATTTGGCCCCGGCCGATTTACCCAAAGAATCGGGCCGC
TTCGACCTCCCTATTGCGCTCGGCATTTTGGCCGCTTCCGAACAAATTCCGGCCGGCGGCTTGGCGCGCTACGAATTTGC
CGGTGAATTATCGCTCTCCGGCGCGCTGCGGCCGATCCGCGGGGCGCTGGCAATGACGAGTGCGATTTGGCGCGGCAGTG
GTGCGGCGGCCGCCTTGATACTGCCGCGCGCGAATGCCGATGAAGCCGCGCTGGTGGCGGCAGCGGCGATTTACCCAGCC
GATTCTTTATTGCAAGTTTGCGCACATTTTGCCGCCGACGAAAAAGCGCCGCGGCTGCAACGACATGTTGCATCGCCACA
AACACAAGCACCGCATTACCCCGATTTTTCCGATATCAAAGCCCAACTCGGGGCCAAGCGCGCCTGCGAGGTCGCGGCCG
CCGGCCGCCATGCGCTGTTGATGTGCGGCCCGCCCGGCAGCGGCAAAACCATGCTCGCCACGCGTATTCCCGGCATTTTG
CCAGCCATGAGCGAGACCGAAGCAATCGAAACCGCGGCGCTGCAATCCTTGAGCACGGGCTTCACGCTTGCTAATTGGAA
AGTACGGCCGTTTCGCGCCCCGCACCATACCGCCTCGGCAGCCGCCCTGGTCGGCGGCGGTAGCAACCCGCGCCCCGGTG
AAATTTCCTTGGCTCACCACGGCATCTTGTTTCTCGATGAATTGCCCGAATTCGGCCGGCGCGTGCTCGAAGTGCTACGC
CAACCGCTGGAAACCGGGCATGTCAGCATCGCGCGAGCCGCGATGCATGCCGAATTTCCCGCGCGCTTTCAATTATTGGC
GGCCATGAATCCCTGTCCCTGTGGCTATTTTGGCGATCCGAATGGGCAATGCCGTTGCACGCCGCAGAATATTGCGCGTT
ACCAAAGTAAAATCTCCGGCCCCTTATTAGATCGCATCGATTTGCAAATCGAGGTAGCCGCGGTCGCCCCGGCCGACCTG
CTCACGGCCGCTGCCAGCGAGAGCAGCGCGACCATGGCGCAGCGGGTGGCGGCGGCTTATACACGGCAAATACAGCGGCA
AGGCAAGGCTAACCAATTTCTCGATAACCGTGAGATCGATCAACTATGCCAAGCGAACGCTGCTGGAATGGCTTTGTTGC
AACAAGCTATCAGTCAATTCCATTGGTCGGCCCGGGCTAGTCACCGCGTGCTCAAAGTGGCACGTACTATTGCCGATCTG
GCAGGGCTGGAGCAGATTAACGCCGCGCATATTGCCGAAGCGATTCAATATCGGCGCGTACTCGGCAAGCATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-145)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.493

99.405

0.532
  comM Vibrio campbellii strain DS40M4

52.286

99.802

0.522
  comM Glaesserella parasuis strain SC1401

51.581

100

0.518
  comM Haemophilus influenzae Rd KW20

51.793

99.603

0.516
  comM Legionella pneumophila str. Paris

48.317

100

0.484
  comM Legionella pneumophila strain ERS1305867

48.317

100

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.215

99.603

0.46