Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RHM56_RS23535 Genome accession   NZ_CP133778
Coordinates   5374891..5376384 (+) Length   497 a.a.
NCBI ID   WP_322236548.1    Uniprot ID   -
Organism   Pseudomonas sp. CCC3.1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5369891..5381384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM56_RS23515 (RHM56_23515) - 5370415..5371143 (-) 729 WP_322236540.1 amino acid ABC transporter permease -
  RHM56_RS23520 (RHM56_23520) - 5371258..5372154 (-) 897 WP_322236542.1 transporter substrate-binding domain-containing protein -
  RHM56_RS23525 (RHM56_23525) - 5372209..5373411 (-) 1203 WP_322236544.1 pyridoxal phosphate-dependent aminotransferase -
  RHM56_RS23530 (RHM56_23530) kdgD 5373796..5374707 (+) 912 WP_322236546.1 5-dehydro-4-deoxyglucarate dehydratase -
  RHM56_RS23535 (RHM56_23535) comM 5374891..5376384 (+) 1494 WP_322236548.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RHM56_RS23540 (RHM56_23540) - 5377223..5377924 (-) 702 WP_322236550.1 DUF4225 domain-containing protein -
  RHM56_RS23545 (RHM56_23545) - 5377906..5378403 (-) 498 WP_322236552.1 Hcp family type VI secretion system effector -
  RHM56_RS23550 (RHM56_23550) - 5378510..5379430 (-) 921 WP_322236554.1 LysR substrate-binding domain-containing protein -
  RHM56_RS23555 (RHM56_23555) - 5379581..5380981 (+) 1401 WP_322236556.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52899.03 Da        Isoelectric Point: 7.8490

>NTDB_id=876679 RHM56_RS23535 WP_322236548.1 5374891..5376384(+) (comM) [Pseudomonas sp. CCC3.1]
MSLAIVYSRAQVGVEAPAVTVETHLANGLPAFTLVGLPETAVKESKDRVRSAILNSSLDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPAKALEQVECLGELALSGAIRSVQGVLPAALAARAAGRALVVPLANAEEASLASGLTVIAAEHL
LQVVAHFAGRAVIEPYAASGLLHVSKPYPDLSDVQGQLSAKRALLIAAAGSHNLLFTGPPGTGKTLLASRLPGLLPPLNE
QEALEVAAIQSVASHVPLSCWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GFIVIARARDRMRFPARFQLVAAMNPCPCGYLGEPTGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTSLNPPLAS
GDTTANAAALVADARERQLQRQGCANAFLDLPGVRAQCRLSDVDNTWLETACERMTLSLRAAHRLLKVARTLADLEQVEC
IERKHLAEALQYRPVGG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=876679 RHM56_RS23535 WP_322236548.1 5374891..5376384(+) (comM) [Pseudomonas sp. CCC3.1]
ATGTCACTGGCCATCGTTTACAGCCGCGCTCAAGTGGGCGTAGAGGCCCCAGCCGTCACGGTCGAGACGCATCTTGCCAA
TGGGTTGCCGGCGTTCACCCTGGTCGGGTTGCCTGAAACAGCGGTCAAGGAAAGCAAAGACCGGGTACGCAGCGCGATTC
TCAATTCCAGCCTGGATTTTCCCGCTCGCCGTATCACCCTCAATCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCCATTGCGCTGGGCATTCTGGCCGCCAGCGGGCAACTACCGGCCAAGGCGCTGGAGCAGGTGGAGTGTCT
GGGGGAGTTGGCGTTGTCGGGCGCCATTCGCTCGGTTCAGGGCGTGTTGCCTGCCGCGTTGGCAGCGCGGGCGGCGGGTC
GAGCCTTAGTCGTGCCGCTGGCGAATGCCGAAGAGGCGTCACTGGCCTCGGGTTTGACAGTGATTGCGGCCGAGCACTTG
CTGCAGGTGGTGGCGCACTTTGCGGGGCGCGCGGTGATTGAGCCCTATGCTGCCAGTGGTTTATTGCACGTGAGCAAACC
GTATCCCGACTTGAGTGATGTTCAGGGGCAACTCTCGGCCAAGCGGGCGTTATTGATCGCCGCCGCTGGCAGCCACAATC
TGCTGTTCACCGGGCCGCCTGGCACCGGAAAAACCTTGCTGGCCAGCCGCTTGCCCGGCTTGCTGCCGCCACTCAACGAG
CAAGAAGCGCTGGAAGTGGCGGCCATCCAGTCCGTCGCCAGTCATGTGCCGTTAAGTTGCTGGCCGCAGCGCCCGTTTCG
CCAGCCGCACCATTCCGCTTCCGGCCCGGCATTGGTGGGCGGCGGCTCAAAACCGCAGCCAGGCGAAATCACCTTGGCGC
ATCACGGGGTATTGTTTCTCGATGAGCTGCCCGAGTTCGATCGCAAAGTGCTGGAAGTGCTCAGAGAACCCATGGAATCG
GGATTTATCGTGATCGCCCGTGCACGGGACCGCATGCGTTTTCCGGCGCGCTTCCAGTTGGTCGCCGCCATGAACCCCTG
CCCTTGCGGCTACTTGGGCGAACCCACAGGACGCTGCCGTTGCACCCCGGAACAGATCCAGCGTTACCGCAACAAACTCT
CCGGCCCCTTGCTCGACCGCATCGACTTGCACCTGACGGTGGCCCGAGAAACCACCTCGCTCAACCCGCCTCTCGCGTCG
GGTGACACCACCGCCAACGCGGCTGCGCTCGTCGCGGACGCGCGGGAGCGGCAGTTGCAACGTCAGGGGTGTGCCAATGC
CTTTCTCGACCTACCGGGGGTGAGGGCCCAATGCAGACTGAGCGATGTGGATAACACCTGGCTGGAGACAGCGTGCGAGC
GGATGACCTTGTCGCTAAGAGCCGCGCATCGCTTATTGAAAGTGGCGCGGACATTGGCTGACCTGGAGCAGGTGGAATGC
ATTGAGCGTAAGCATCTGGCCGAGGCGTTGCAGTATCGGCCGGTGGGTGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.6

100

0.559
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Vibrio cholerae strain A1552

55.556

99.598

0.553
  comM Glaesserella parasuis strain SC1401

54.291

100

0.547
  comM Legionella pneumophila str. Paris

48.992

99.799

0.489
  comM Legionella pneumophila strain ERS1305867

48.992

99.799

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.732

100

0.453