Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RHM62_RS02525 Genome accession   NZ_CP133777
Coordinates   535341..536864 (-) Length   507 a.a.
NCBI ID   WP_322124015.1    Uniprot ID   -
Organism   Actimicrobium sp. CCC2.4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 530341..541864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM62_RS02495 (RHM62_02495) rsmB 530657..531970 (-) 1314 WP_322124009.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  RHM62_RS02500 (RHM62_02500) - 531974..532612 (-) 639 WP_322124010.1 LysE family translocator -
  RHM62_RS02505 (RHM62_02505) - 532985..533545 (-) 561 WP_322124011.1 ATP-dependent Clp protease proteolytic subunit -
  RHM62_RS02510 (RHM62_02510) - 533690..534172 (+) 483 WP_322124012.1 GNAT family N-acetyltransferase -
  RHM62_RS02515 (RHM62_02515) - 534258..534602 (-) 345 WP_322124013.1 DUF1840 domain-containing protein -
  RHM62_RS02520 (RHM62_02520) - 534723..535250 (-) 528 WP_322124014.1 hypothetical protein -
  RHM62_RS02525 (RHM62_02525) comM 535341..536864 (-) 1524 WP_322124015.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RHM62_RS02530 (RHM62_02530) - 537018..537263 (-) 246 WP_322124016.1 accessory factor UbiK family protein -
  RHM62_RS02535 (RHM62_02535) - 537497..538228 (+) 732 WP_322124017.1 TorF family putative porin -
  RHM62_RS02540 (RHM62_02540) - 538241..538579 (+) 339 WP_009667189.1 P-II family nitrogen regulator -
  RHM62_RS02545 (RHM62_02545) - 538590..540137 (+) 1548 WP_322124018.1 ammonium transporter -
  RHM62_RS02550 (RHM62_02550) gshA 540360..541658 (+) 1299 WP_322124019.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54306.27 Da        Isoelectric Point: 8.5996

>NTDB_id=876641 RHM62_RS02525 WP_322124015.1 535341..536864(-) (comM) [Actimicrobium sp. CCC2.4]
MSLAVLKSRALAGMQAPQVTVEVHLANGLPGFMIVGLPETEVKESRDRVRAALQNARFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASGQMPAGELDDYEFAGELSLSGELRPVRGALAMTFAMHRGDDPGRARRGFILPRASADEAALVKDALI
YPANSLLEVCAHFAAADGNSRLARHHCKAEPVLDVYPDFADVKGQLQAKRGLEIAAAGNHSALLIGPPGTGKSMLAARFA
GILPPMTDDEALESAAVQSLSGGFTATRWKVRPFRSPHHTASGVALVGGGGTPRPGEISLAHRGVLFLDELPEFDRRVLE
VLREPLESGRITISRAARQADFPARFQLIAAMNPCPCGYTGHPSGQCRCTPDNVARYQSRISGPLLDRIDMQIVVAALPH
ADLLKAAGGEASAVIALRVKGAFDRQHLRAGKTNNLLSTSEVDLHCQPETAAAELLHAAMLRLNWSARSYHRVLKVARTI
ADLAGAVQIGSQHVGEAIQYRRGLREQ

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=876641 RHM62_RS02525 WP_322124015.1 535341..536864(-) (comM) [Actimicrobium sp. CCC2.4]
ATGAGCCTTGCCGTACTCAAAAGCCGTGCCCTGGCCGGCATGCAAGCCCCCCAGGTAACCGTGGAAGTCCATCTTGCCAA
CGGCTTGCCGGGCTTCATGATCGTCGGATTACCGGAAACCGAGGTCAAGGAATCGCGGGATCGGGTTCGCGCCGCACTCC
AAAACGCCCGCTTCGAATTCCCGGCCCGACGCATCACCGTCAATCTCGCCCCCGCTGACCTGCCCAAGGAATCAGGCCGG
TTTGACTTGCCGATTGCACTCGGTATCCTGGCCGCATCCGGACAGATGCCGGCGGGTGAACTGGATGATTACGAGTTTGC
AGGCGAACTGTCTTTGTCCGGCGAACTGCGACCGGTACGCGGGGCCCTCGCGATGACCTTTGCAATGCATCGCGGCGACG
ATCCGGGCCGCGCGCGACGCGGATTCATCCTGCCGCGCGCCAGCGCCGATGAAGCCGCGCTGGTCAAGGATGCCCTGATC
TATCCGGCCAACTCGCTGCTGGAAGTCTGCGCGCACTTCGCGGCCGCCGACGGCAATAGCCGGCTAGCCCGTCACCATTG
CAAGGCGGAACCGGTTCTCGATGTCTATCCTGATTTTGCCGATGTCAAAGGACAGTTGCAGGCCAAGCGCGGGCTCGAAA
TTGCCGCAGCAGGAAATCACAGCGCCCTACTGATTGGCCCGCCCGGCACCGGCAAATCGATGCTGGCCGCGCGTTTCGCC
GGCATCCTGCCACCGATGACCGACGACGAAGCACTTGAATCGGCCGCCGTGCAATCACTGTCTGGCGGATTCACGGCTAC
CCGCTGGAAAGTACGACCGTTCCGCTCGCCGCATCACACGGCGTCTGGCGTGGCACTGGTGGGCGGCGGCGGCACGCCCC
GTCCGGGCGAGATTTCGCTGGCCCATCGTGGCGTCCTGTTCCTCGACGAATTACCGGAATTTGATCGCCGCGTCCTCGAG
GTCTTGCGCGAGCCGCTGGAATCAGGCCGCATTACGATTTCACGGGCCGCGCGACAAGCCGACTTTCCGGCACGTTTTCA
GCTCATCGCCGCAATGAATCCCTGTCCTTGCGGCTATACCGGCCACCCTTCCGGCCAGTGCCGCTGCACGCCAGACAATG
TTGCACGCTATCAAAGCCGGATTTCCGGGCCGCTGCTTGACCGCATCGATATGCAAATCGTTGTCGCCGCGCTGCCGCAT
GCAGACCTGCTGAAGGCCGCAGGTGGCGAGGCCTCGGCCGTCATTGCGCTCCGTGTCAAGGGTGCCTTCGACCGCCAACA
CCTGAGGGCGGGCAAGACCAATAATTTGCTGTCAACGAGCGAAGTCGATCTCCACTGCCAGCCCGAGACAGCCGCTGCCG
AGCTGTTGCATGCGGCGATGCTGCGACTGAACTGGTCAGCACGCTCTTACCATCGCGTGCTCAAGGTTGCACGCACGATT
GCCGATCTTGCTGGAGCCGTTCAGATCGGGTCCCAACATGTCGGCGAGGCCATCCAGTACCGCCGCGGCTTGCGCGAGCA
ATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)

Subunit ChlI of Mg-chelatase (ChlI)

(21-131)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.672

99.211

0.542
  comM Vibrio campbellii strain DS40M4

53.571

99.408

0.533
  comM Haemophilus influenzae Rd KW20

52.055

100

0.525
  comM Glaesserella parasuis strain SC1401

52.165

100

0.523
  comM Legionella pneumophila str. Paris

49.606

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.606

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.098

100

0.454