Detailed information NTG0876634

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: RHM64_RS23500
• Genome accession: NZ_CP133776
• Coordinates: 5168606..5170099 (+)
• Length: 497 a.a.
• NCBI ID: WP_322166637.1
• Uniprot ID: -
• Organism: Pseudomonas sp. AH2
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5163606..5175099

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHM64_RS23470 (RHM64_23470)	-	5164249..5164941 (+)	693	WP_322166632.1	HAD family hydrolase	-
RHM64_RS23475 (RHM64_23475)	sutA	5165014..5165343 (-)	330	WP_322166633.1	transcriptional regulator SutA	-
RHM64_RS23480 (RHM64_23480)	-	5165437..5165868 (-)	432	WP_322166634.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
RHM64_RS23485 (RHM64_23485)	-	5166046..5167392 (-)	1347	WP_322166635.1	ammonium transporter	-
RHM64_RS23490 (RHM64_23490)	glnK	5167428..5167766 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
RHM64_RS23495 (RHM64_23495)	-	5168188..5168448 (+)	261	WP_322166636.1	accessory factor UbiK family protein	-
RHM64_RS23500 (RHM64_23500)	comM	5168606..5170099 (+)	1494	WP_322166637.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
RHM64_RS25345	-	5170193..5171290 (-)	1098	WP_416194829.1	methyl-accepting chemotaxis protein	-
RHM64_RS25350	-	5171309..5172168 (-)	860	Protein_4643	Cache 3/Cache 2 fusion domain-containing protein	-
RHM64_RS23510 (RHM64_23510)	-	5172363..5173283 (-)	921	WP_322166638.1	LysR substrate-binding domain-containing protein	-
RHM64_RS23515 (RHM64_23515)	-	5173436..5174833 (+)	1398	WP_322166640.1	NorM family multidrug efflux MATE transporter	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 52981.87 Da
• Isoelectric Point: 7.6901

>NTDB_id=876634 RHM64_RS23500 WP_322166637.1 5168606..5170099(+) (comM) [Pseudomonas sp. AH2]
MSLAIVLSRAQVGVEAPAVTVECHLANGLPALTLVGLPEGAVRESKDRVRSAILNSGFQFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASTQLPAFALQDVECLGELALSGGIRPVQGVLPAALAARAAGHTLIVPTANAEEACLASGLRVIAVNDL
RQLVAHFNGQAPIIPYTSSGLLHQSKPYPDLSEVQGQTAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASQTPLTSWPLRPFRQPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCRCSTEQIQRYRNKLSGPLLDRIDLHLTVAREATALNPGPQT
GDDTATAAALVAQARDRQQQRQGCPNAFLDLPGLRKHCPLSIEDETWLETACERLTLSLRAAHRLLKVARTLADLEQVDG
IVRHHLAEALQYRPSGY

Nucleotide

• Length: 1494 bp

>NTDB_id=876634 RHM64_RS23500 WP_322166637.1 5168606..5170099(+) (comM) [Pseudomonas sp. AH2]
ATGTCTCTCGCTATCGTTCTCAGCCGCGCCCAAGTAGGCGTGGAAGCACCTGCCGTTACTGTCGAATGTCATTTGGCCAA
CGGCTTGCCGGCGCTAACGCTGGTGGGCCTGCCCGAGGGAGCGGTCAGGGAAAGTAAGGACCGGGTACGCAGCGCCATTT
TGAATTCAGGTTTTCAATTTCCGGCACGGCGGATCACGCTCAATCTCGCCCCGGCAGATTTGCCCAAGGACGGTGGACGC
TTCGACCTTGCCATTGCATTGGGACTGCTGGCCGCCAGCACCCAATTACCTGCGTTTGCACTCCAGGACGTGGAGTGTTT
GGGTGAATTGGCATTGTCAGGCGGCATTCGGCCAGTTCAGGGCGTGTTGCCTGCGGCGTTGGCAGCACGGGCGGCAGGCC
ATACGCTGATCGTGCCTACGGCGAACGCTGAAGAAGCGTGTTTGGCGTCCGGTCTGAGGGTCATCGCCGTTAATGACCTG
CGTCAGCTGGTGGCGCACTTCAACGGTCAGGCGCCAATCATCCCCTATACATCCAGCGGCCTGTTGCACCAGAGCAAGCC
ATACCCGGACTTAAGCGAAGTCCAAGGCCAAACTGCGGCTAAACGTGCGCTGTTGGTGGCGGCGGCCGGGGCGCACAATC
TGCTTTTCAGCGGCCCGCCAGGCACCGGCAAAACACTGCTCGCCAGCCGCCTGCCCGGTTTGTTGCCGCCGCTGGATGAA
CATGAAGCGCTGGAGGTTGCGGCGATTCAGTCGGTTGCCAGCCAAACACCTCTCACGAGTTGGCCGCTGCGGCCTTTCCG
GCAACCGCATCACTCAGCCTCCGGTGCGGCGCTGGTCGGTGGCGGCAGTCGGCCTCAGCCGGGGGAAATTACCCTCGCTC
ACCACGGCGTGCTATTTCTCGATGAGCTGCCTGAGTTCGACCGCAAGGTGCTGGAGGTGCTGCGTGAGCCGCTGGAGTCT
GGCCACATCGTCATCGCCCGCGCCCGTGACCGAGTGCGCTTTCCGGCGCGTTTTCAGTTAGTCGCCGCGATGAACCCGTG
TCCGTGCGGTTATCTCGGAGAGCCCAGCGGTCGCTGTCGGTGTTCGACCGAGCAGATTCAGCGCTATCGCAACAAATTGT
CCGGCCCACTGCTGGACCGCATCGACTTGCACCTGACCGTCGCCCGTGAAGCCACTGCGCTCAACCCCGGCCCACAAACC
GGCGACGACACCGCCACAGCCGCCGCGCTCGTCGCCCAAGCCCGCGACCGGCAACAACAGCGCCAAGGTTGCCCCAACGC
CTTCCTCGACTTGCCAGGACTGCGCAAGCATTGCCCCTTATCGATTGAAGATGAGACGTGGCTGGAAACCGCCTGCGAGC
GCCTGACGCTTTCACTTAGGGCCGCGCACCGCTTGCTAAAAGTCGCACGGACGTTGGCAGACTTGGAGCAGGTCGATGGG
ATTGTCCGTCATCATCTGGCGGAAGCGTTGCAGTACCGGCCTTCGGGTTATTGA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (403-493)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	55.152	99.598	0.549
comM	Vibrio cholerae strain A1552	54.949	99.598	0.547
comM	Haemophilus influenzae Rd KW20	53.293	100	0.537
comM	Glaesserella parasuis strain SC1401	53	100	0.533
comM	Legionella pneumophila str. Paris	48.814	100	0.497
comM	Legionella pneumophila strain ERS1305867	48.814	100	0.497
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.437	100	0.461