Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RG903_RS02095 Genome accession   NZ_CP133759
Coordinates   418587..420101 (-) Length   504 a.a.
NCBI ID   WP_028988734.1    Uniprot ID   -
Organism   Thermithiobacillus tepidarius DSM 3134     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413587..425101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG903_RS02065 (RG903_02055) - 414513..414743 (+) 231 WP_028988739.1 DUF3562 domain-containing protein -
  RG903_RS02070 (RG903_02060) - 414760..415152 (-) 393 WP_155989689.1 HMA2 domain-containing protein -
  RG903_RS02075 (RG903_02065) - 415319..416296 (-) 978 WP_028988737.1 magnesium transporter -
  RG903_RS02080 (RG903_02070) - 416299..417336 (-) 1038 WP_211218619.1 apolipoprotein A1/A4/E family protein -
  RG903_RS02085 (RG903_02075) - 417528..418022 (-) 495 WP_028988735.1 HMA2 domain-containing protein -
  RG903_RS02090 (RG903_02080) - 418019..418363 (-) 345 WP_051180676.1 DUF5132 domain-containing protein -
  RG903_RS02095 (RG903_02085) comM 418587..420101 (-) 1515 WP_028988734.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RG903_RS02100 (RG903_02090) - 420112..420447 (-) 336 WP_051180675.1 accessory factor UbiK family protein -
  RG903_RS02105 (RG903_02095) - 420468..421658 (-) 1191 WP_028988733.1 FAD-dependent monooxygenase -
  RG903_RS02110 (RG903_02100) - 421645..422883 (-) 1239 WP_038017405.1 FAD-dependent monooxygenase -
  RG903_RS02115 (RG903_02105) - 423183..423923 (+) 741 WP_028988732.1 TorF family putative porin -
  RG903_RS02120 (RG903_02110) glnK 423955..424293 (+) 339 WP_028988731.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53004.78 Da        Isoelectric Point: 7.8132

>NTDB_id=876389 RG903_RS02095 WP_028988734.1 418587..420101(-) (comM) [Thermithiobacillus tepidarius DSM 3134]
MALAIVHSRALTGIHAASVTVEVDLAAGLPGFTVVGLPEAAVKEAKDRVRAAIHNSGFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAANGQVPATHLRDCEFLGELALDGTLRPVRGALAAALAAGQAGHALLLPAASAPEATLAGCTPVFAATSL
AQVTAHLRDLERLDPCPPYAAEALAAGYPDLAEVRGQEGAKRALEVAAAGGHHILFLGPPGTGKTMLASRLPGILPPPAR
EESLEIAAIHSTREHGFDPASWGRRPFRSPHHSASSVALVGGGSQPKPGEISLAHHGVLFLDELPEFPRQVLEVLREPLE
TGEIHISRAGRQAQFPARFQLVAAMNPCPCGHLGDPRHHCRCTPAQVAQYRARLSGPLLDRIDIQMEVPALPVEALHGQA
PASAESSATVRERVMRSRARQLARQGKANALLGPEEISAHCQPDAAGQKLLDAALARLGLSARAYHRILKLARTIADLAQ
AESIHGAHVAEAIQYRRLDRAAAA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=876389 RG903_RS02095 WP_028988734.1 418587..420101(-) (comM) [Thermithiobacillus tepidarius DSM 3134]
ATGGCATTGGCCATCGTCCACAGCCGGGCGCTCACCGGCATCCATGCCGCGTCGGTGACCGTCGAGGTGGACCTGGCCGC
CGGCCTGCCCGGCTTCACCGTGGTCGGACTGCCGGAAGCCGCCGTCAAGGAAGCCAAGGACCGGGTGCGCGCCGCCATCC
ACAACAGCGGCTTCGAGTTCCCGGCCAAGCGCATCACCGTCAACCTGGCCCCCGCCGATCTGCCCAAGGAAGGCGGGCGC
TTCGACCTGCCCATCGCGCTGGGCATCCTGGCCGCCAATGGCCAGGTCCCGGCCACGCACCTGCGCGATTGCGAGTTCCT
GGGCGAGCTGGCGCTGGACGGCACCCTGCGGCCCGTTCGCGGCGCGCTGGCCGCCGCGTTGGCGGCGGGCCAGGCCGGCC
ATGCCCTGCTGCTGCCCGCCGCCAGCGCCCCTGAAGCCACCCTGGCCGGCTGCACCCCGGTCTTCGCCGCGACCAGCTTG
GCCCAGGTCACGGCCCACCTGCGCGACTTGGAGCGCCTGGATCCCTGCCCGCCCTACGCGGCGGAGGCGCTGGCGGCCGG
CTATCCCGATCTGGCCGAAGTGCGCGGCCAGGAGGGCGCCAAGCGCGCCCTGGAAGTGGCCGCGGCCGGCGGCCACCACA
TTCTTTTCCTCGGCCCGCCCGGCACCGGCAAGACCATGCTCGCCAGCCGCCTGCCGGGCATCCTGCCGCCGCCGGCGCGC
GAGGAGAGCCTGGAAATCGCCGCCATCCACAGCACCCGCGAGCACGGCTTCGACCCCGCCAGCTGGGGCCGGCGCCCGTT
CCGCTCGCCGCATCACAGCGCCAGCAGCGTGGCCCTGGTGGGCGGCGGTTCGCAGCCGAAGCCCGGCGAGATTTCCCTGG
CCCACCACGGCGTGCTCTTTCTCGATGAGCTGCCCGAATTCCCGCGCCAGGTGCTCGAAGTGCTGCGCGAGCCTCTGGAA
ACCGGGGAGATCCACATCTCCCGCGCCGGCCGCCAGGCGCAGTTCCCGGCCCGCTTCCAACTGGTGGCGGCCATGAACCC
GTGTCCCTGCGGGCACCTGGGCGACCCGCGCCACCACTGCCGCTGCACCCCGGCGCAGGTGGCCCAGTACCGCGCCCGCC
TGTCCGGGCCGCTGCTGGATCGCATCGACATCCAGATGGAAGTGCCGGCGCTGCCGGTGGAGGCCCTGCACGGCCAGGCA
CCCGCCAGCGCGGAAAGCAGCGCTACCGTGCGCGAGCGCGTGATGCGCAGCCGGGCGCGGCAACTGGCCCGCCAGGGCAA
GGCCAACGCCCTGCTCGGCCCGGAGGAGATCAGCGCCCACTGCCAGCCCGACGCCGCGGGGCAAAAGCTCCTGGACGCCG
CCCTCGCCCGCCTCGGACTCTCCGCCCGCGCCTACCACCGCATCCTCAAGCTGGCCCGCACCATCGCCGACCTGGCCCAA
GCCGAGTCCATCCACGGCGCCCACGTGGCCGAAGCCATCCAGTACCGCCGGCTGGACCGGGCCGCGGCGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.6

99.206

0.552
  comM Vibrio cholerae strain A1552

55.4

99.206

0.55
  comM Haemophilus influenzae Rd KW20

54.059

100

0.542
  comM Glaesserella parasuis strain SC1401

53.571

100

0.536
  comM Legionella pneumophila str. Paris

50.905

98.611

0.502
  comM Legionella pneumophila strain ERS1305867

50.905

98.611

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.85

100

0.472