Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RDJ20_RS26775 Genome accession   NZ_CP133755
Coordinates   5565938..5567275 (+) Length   445 a.a.
NCBI ID   WP_042168494.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain BJ86     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5560938..5572275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDJ20_RS26750 (RDJ20_26750) pgeF 5561081..5561809 (-) 729 WP_058179501.1 peptidoglycan editing factor PgeF -
  RDJ20_RS26755 (RDJ20_26755) rluD 5561806..5562768 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RDJ20_RS26760 (RDJ20_26760) - 5562914..5563939 (+) 1026 WP_033972916.1 outer membrane protein assembly factor BamD -
  RDJ20_RS26765 (RDJ20_26765) - 5564096..5564341 (+) 246 WP_003102591.1 PP0621 family protein -
  RDJ20_RS26770 (RDJ20_26770) pilS 5564331..5565923 (+) 1593 WP_196745313.1 two-component system sensor histidine kinase PilS Regulator
  RDJ20_RS26775 (RDJ20_26775) pilR 5565938..5567275 (+) 1338 WP_042168494.1 two-component system response regulator PilR Regulator
  RDJ20_RS26780 (RDJ20_26780) thiO 5567321..5568415 (-) 1095 WP_033972971.1 glycine oxidase ThiO -
  RDJ20_RS26785 (RDJ20_26785) - 5568550..5569059 (+) 510 WP_039028119.1 GspH/FimT family pseudopilin -
  RDJ20_RS26790 (RDJ20_26790) - 5569165..5569671 (+) 507 WP_003134935.1 GspH/FimT family pseudopilin -
  RDJ20_RS26795 (RDJ20_26795) pilV 5569662..5570219 (+) 558 WP_003125211.1 type 4a pilus minor pilin PilV Machinery gene
  RDJ20_RS26800 (RDJ20_26800) pilW 5570216..5571040 (+) 825 WP_042168489.1 type 4a pilus minor pilin PilW -
  RDJ20_RS26805 (RDJ20_26805) pilX 5571037..5571624 (+) 588 WP_033972921.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49767.09 Da        Isoelectric Point: 5.8654

>NTDB_id=876350 RDJ20_RS26775 WP_042168494.1 5565938..5567275(+) (pilR) [Pseudomonas aeruginosa strain BJ86]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGTSQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=876350 RDJ20_RS26775 WP_042168494.1 5565938..5567275(+) (pilR) [Pseudomonas aeruginosa strain BJ86]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAGCTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGTTGGTGGCAACCGCCCTGCGCCTGCGCAACCCGGAGGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAATCACCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCATGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGTGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGAGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCAGCCGAAGTCGGCGCCGGGCGCTTCCGCCAAGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGACTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTTCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTACCAGCCAGGAAGGCGCGGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCACTCGAGGAGACGCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.17

100

0.384