Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RDJ20_RS26795 Genome accession   NZ_CP133755
Coordinates   5569662..5570219 (+) Length   185 a.a.
NCBI ID   WP_003125211.1    Uniprot ID   A0A6A9K9C7
Organism   Pseudomonas aeruginosa strain BJ86     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5564662..5575219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDJ20_RS26775 (RDJ20_26775) pilR 5565938..5567275 (+) 1338 WP_042168494.1 two-component system response regulator PilR Regulator
  RDJ20_RS26780 (RDJ20_26780) thiO 5567321..5568415 (-) 1095 WP_033972971.1 glycine oxidase ThiO -
  RDJ20_RS26785 (RDJ20_26785) - 5568550..5569059 (+) 510 WP_039028119.1 GspH/FimT family pseudopilin -
  RDJ20_RS26790 (RDJ20_26790) - 5569165..5569671 (+) 507 WP_003134935.1 GspH/FimT family pseudopilin -
  RDJ20_RS26795 (RDJ20_26795) pilV 5569662..5570219 (+) 558 WP_003125211.1 type 4a pilus minor pilin PilV Machinery gene
  RDJ20_RS26800 (RDJ20_26800) pilW 5570216..5571040 (+) 825 WP_042168489.1 type 4a pilus minor pilin PilW -
  RDJ20_RS26805 (RDJ20_26805) pilX 5571037..5571624 (+) 588 WP_033972921.1 type 4a pilus minor pilin PilX -
  RDJ20_RS26810 (RDJ20_26810) pilY1 5571636..5575121 (+) 3486 WP_033976379.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20087.19 Da        Isoelectric Point: 8.2171

>NTDB_id=876351 RDJ20_RS26795 WP_003125211.1 5569662..5570219(+) (pilV) [Pseudomonas aeruginosa strain BJ86]
MLLKSRHRSLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=876351 RDJ20_RS26795 WP_003125211.1 5569662..5570219(+) (pilV) [Pseudomonas aeruginosa strain BJ86]
ATGCTATTGAAATCGCGACACAGGTCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGTACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGATACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A9K9C7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989