Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RG306_RS01255 Genome accession   NZ_CP133666
Coordinates   276258..277745 (-) Length   495 a.a.
NCBI ID   WP_005034447.1    Uniprot ID   N9CXT1
Organism   Acinetobacter bereziniae strain UCO-553     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 271258..282745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG306_RS01240 (RG306_01240) - 272735..273787 (+) 1053 WP_004825556.1 LacI family DNA-binding transcriptional regulator -
  RG306_RS01245 (RG306_01245) - 274062..275243 (+) 1182 WP_005034451.1 carbohydrate porin -
  RG306_RS01250 (RG306_01250) - 275445..276161 (-) 717 WP_010590840.1 hypothetical protein -
  RG306_RS01255 (RG306_01255) comM 276258..277745 (-) 1488 WP_005034447.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RG306_RS01260 (RG306_01260) - 277817..278044 (-) 228 WP_004825547.1 accessory factor UbiK family protein -
  RG306_RS01265 (RG306_01265) glnK 278336..278674 (+) 339 WP_004725283.1 P-II family nitrogen regulator -
  RG306_RS01270 (RG306_01270) amt 278742..280145 (+) 1404 WP_004825546.1 ammonium transporter -
  RG306_RS01275 (RG306_01275) nrdR 280306..280770 (+) 465 WP_004825545.1 transcriptional regulator NrdR -
  RG306_RS01280 (RG306_01280) ribD 280803..281915 (+) 1113 WP_005034444.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54439.53 Da        Isoelectric Point: 7.8424

>NTDB_id=875746 RG306_RS01255 WP_005034447.1 276258..277745(-) (comM) [Acinetobacter bereziniae strain UCO-553]
MSLAKIYTRGLLGLHAPLIEVEVHVSAGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIATGQLPENVTDDFEFIGELALDGHLRPVTGTLTIAMACQLAKHQLMLPQENADEAAQLPEFKVFAAHHL
KQVCDHFLNTQKIEVTSTQKSTLDKQYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPALNP
QENLEVASIYSIANTQHHFGQRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDKKVLEVLRQPLESKE
IIISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAESIKRYQSRISGPLLDRIDLHIDVPPLKAQELQDTTPVE
DSATVRERVLQAFHFQIQRQGGLNHALSPKQLEKHVVLDETSQKMIEMAQQRLNLSARAYHRILRVSRTIADLAQSEQIQ
STHLTEALSYRGTQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=875746 RG306_RS01255 WP_005034447.1 276258..277745(-) (comM) [Acinetobacter bereziniae strain UCO-553]
ATGTCTTTAGCCAAAATTTATACACGAGGCTTACTTGGATTGCATGCACCTTTAATTGAAGTAGAGGTCCATGTTAGTGC
AGGACTACCTTCTTTAACGATTGTTGGTTTGGCAGAAGCAGCCGTTCGTGAAAGTAAGGATCGTGTCCGCTCTGCAATAA
TCAATAGTGGTTTTCAGTTTCCAACCAAACGCTTGACCATCAATCTGGCACCTGCAGACCTTCCTAAGGATGGCTCTCGC
TTAGATCTTCCGATTGCATTAGGAATTCTGATTGCGACAGGTCAACTCCCTGAGAATGTCACAGACGATTTCGAGTTTAT
TGGTGAGTTAGCACTGGATGGTCATTTAAGACCTGTTACTGGTACATTAACGATTGCAATGGCTTGTCAATTGGCAAAGC
ACCAATTGATGCTTCCTCAAGAAAATGCTGATGAAGCCGCACAATTACCTGAATTCAAGGTATTTGCTGCACATCATTTA
AAACAAGTCTGTGATCATTTTTTAAATACACAAAAAATTGAAGTAACCTCCACACAAAAATCTACTTTGGACAAACAATA
TAAATTTGATTTGGCTGATGTAAAAGGTCAGTTACGCCCTCGAAGAGCTCTAGAAATTGCCGCTGCAGGTGGACACTCGC
TTTTATTTAAAGGGCCGCCGGGAACAGGTAAAACACTTTTAGCTTCACGTTTACCTAGTATTTTGCCTGCATTGAATCCA
CAAGAAAATCTCGAAGTCGCCAGTATTTATTCCATTGCCAACACTCAACATCACTTTGGGCAGCGACCTTTTCGAGCACC
TCATCATACTGCGTCTGCAATTGCCTTGGTAGGAGGTGGATCGAACCCGAAACCTGGAGAAATTACACTTGCACATTTAG
GGGTACTTTTCTTGGATGAATTACCCGAGTTTGATAAGAAAGTTCTAGAAGTTTTAAGGCAACCCCTAGAGTCTAAAGAA
ATCATCATTTCGAGAGCATCAAGACAAATTACCTTTCCAGCAAACTTTCAACTCATCGCAGCAATGAATCCATGTCCTTG
TGGTTATGCTTTTAATCAAGATAGCCGTTGCCAGTGCTCAGCTGAATCAATCAAACGTTATCAAAGTCGAATCTCAGGTC
CTTTATTGGATCGTATTGATTTACATATCGATGTACCACCCTTAAAAGCTCAAGAATTACAAGATACTACCCCTGTTGAA
GATTCAGCAACAGTGCGAGAACGCGTACTCCAAGCTTTTCATTTTCAAATTCAACGCCAAGGCGGATTAAATCACGCGTT
ATCGCCAAAACAGTTGGAAAAGCATGTAGTTTTGGATGAAACATCCCAAAAGATGATTGAGATGGCACAACAACGCTTAA
ACTTATCGGCTCGGGCGTATCACCGTATTTTACGAGTTTCTAGAACCATTGCAGATTTAGCACAAAGTGAACAAATTCAA
AGTACACATTTGACAGAAGCTTTGTCTTATCGGGGAACGCAGTCTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9CXT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.2

100

0.517
  comM Glaesserella parasuis strain SC1401

50.701

100

0.511
  comM Vibrio campbellii strain DS40M4

50.505

100

0.505
  comM Vibrio cholerae strain A1552

50.303

100

0.503
  comM Legionella pneumophila str. Paris

49.597

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.597

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.215

100

0.469