Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RG306_RS00930 Genome accession   NZ_CP133666
Coordinates   196541..197668 (-) Length   375 a.a.
NCBI ID   WP_005034547.1    Uniprot ID   N9ECF8
Organism   Acinetobacter bereziniae strain UCO-553     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 191541..202668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG306_RS00905 (RG306_00905) - 191650..192396 (-) 747 WP_005034555.1 helix-turn-helix domain-containing protein -
  RG306_RS00910 (RG306_00910) - 192408..193652 (-) 1245 WP_200150058.1 MFS transporter -
  RG306_RS00915 (RG306_00915) - 193793..194437 (+) 645 WP_005034551.1 TetR/AcrR family transcriptional regulator -
  RG306_RS00920 (RG306_00920) - 194594..195493 (+) 900 WP_004831959.1 DMT family transporter -
  RG306_RS00925 (RG306_00925) - 195924..196493 (-) 570 WP_005034549.1 L-threonylcarbamoyladenylate synthase -
  RG306_RS00930 (RG306_00930) dprA 196541..197668 (-) 1128 WP_005034547.1 DNA-processing protein DprA Machinery gene
  RG306_RS00935 (RG306_00935) tsaP 197692..198843 (-) 1152 WP_005034545.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  RG306_RS00940 (RG306_00940) def 198967..199497 (+) 531 WP_004831951.1 peptide deformylase -
  RG306_RS00945 (RG306_00945) - 199566..200069 (+) 504 WP_370469256.1 DUF2946 family protein -
  RG306_RS00950 (RG306_00950) - 200152..202236 (+) 2085 WP_005034542.1 TonB-dependent copper receptor -
  RG306_RS00955 (RG306_00955) - 202262..202504 (+) 243 WP_005034540.1 DUF4199 domain-containing protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 41964.71 Da        Isoelectric Point: 6.5581

>NTDB_id=875744 RG306_RS00930 WP_005034547.1 196541..197668(-) (dprA) [Acinetobacter bereziniae strain UCO-553]
MLNQIPDHQLNAIQLWYLVQHSTSAFRKLESYFGSIAKAVAPESLPRWSELKIHKNHIERANVFVTAQGQSQFKICLDKI
QQHSDFILLDTDSNYPQQLLPYQNHPPILFGKGSSQNLSQPQIAIVGSRKASPHGKQVAYDFAYYLSEKGFFITSGLAQG
IDEAAHMGGLKNQRTIAVIGTGLDLVYPSQNRKLQEQILQNSGSIISEYLPETQPISRNFPYRNRIVSGLSLGVLVAEAQ
LGSGSLITAQTAAEQGKIIFAIPGHIYGEHHQGCHQLIREGAILVDHPEQIVEDLALPTQWQCTQQAETNSQPPEIPEYL
FQLYQLLDWIGQDLDTLAQKSKLNTAQLTSYLMELELLGLCIQQSGLYLRCRVSY

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=875744 RG306_RS00930 WP_005034547.1 196541..197668(-) (dprA) [Acinetobacter bereziniae strain UCO-553]
ATGTTGAATCAAATACCCGATCATCAATTGAATGCCATTCAACTTTGGTATTTGGTTCAACACTCAACCAGCGCCTTCCG
TAAGCTAGAGAGTTATTTTGGTTCTATTGCAAAAGCGGTAGCTCCAGAAAGCTTACCCCGCTGGTCTGAACTTAAAATTC
ATAAAAATCATATCGAGCGAGCCAATGTCTTTGTAACAGCACAAGGACAATCCCAATTTAAAATATGCTTAGATAAAATC
CAACAACATAGTGATTTTATTCTGTTAGATACCGATTCAAATTACCCACAACAACTGCTTCCTTATCAAAACCATCCTCC
AATTTTATTTGGAAAAGGGTCTTCACAAAACTTGAGTCAACCTCAGATTGCAATTGTCGGTAGTCGAAAAGCCAGTCCGC
ATGGAAAACAAGTGGCATATGATTTTGCTTATTATTTAAGTGAAAAAGGCTTTTTTATTACCAGCGGGTTAGCGCAAGGA
ATTGATGAAGCTGCACATATGGGTGGTCTCAAAAACCAGCGAACCATTGCTGTGATTGGTACAGGGTTAGATTTAGTTTA
TCCAAGCCAAAATCGAAAGTTACAAGAGCAAATTCTACAAAATTCTGGAAGCATCATCAGTGAGTATCTTCCAGAGACTC
AGCCTATTTCACGTAATTTTCCTTATCGAAATCGTATTGTGAGCGGTTTAAGTCTAGGTGTTCTTGTCGCAGAAGCACAA
TTGGGTAGCGGCTCATTAATTACCGCTCAAACGGCGGCTGAACAAGGTAAAATTATTTTTGCCATTCCTGGGCATATTTA
TGGAGAACACCACCAAGGTTGCCATCAACTCATTCGTGAGGGTGCAATCCTTGTTGATCATCCTGAACAAATTGTGGAAG
ATTTAGCTCTACCCACCCAATGGCAATGTACACAGCAAGCTGAAACCAACTCACAGCCCCCTGAAATTCCTGAATATTTA
TTCCAACTCTACCAATTACTAGATTGGATTGGGCAAGACCTAGATACATTGGCTCAAAAATCCAAACTCAACACCGCACA
ATTAACCAGTTATTTGATGGAATTAGAACTGTTGGGACTCTGCATTCAACAATCTGGACTATACTTACGTTGCCGAGTCA
GCTATTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(322-366)

DNA recombination-mediator protein A (DNA_processg_A)

(87-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9ECF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.133

100

0.661
  dprA Acinetobacter baumannii D1279779

64.456

100

0.648
  dprA Acinetobacter baylyi ADP1

61.358

100

0.627
  dprA Haemophilus influenzae Rd KW20

38.992

100

0.392