Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   RG306_RS00935 Genome accession   NZ_CP133666
Coordinates   197692..198843 (-) Length   383 a.a.
NCBI ID   WP_005034545.1    Uniprot ID   N9CWZ7
Organism   Acinetobacter bereziniae strain UCO-553     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 192692..203843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG306_RS00915 (RG306_00915) - 193793..194437 (+) 645 WP_005034551.1 TetR/AcrR family transcriptional regulator -
  RG306_RS00920 (RG306_00920) - 194594..195493 (+) 900 WP_004831959.1 DMT family transporter -
  RG306_RS00925 (RG306_00925) - 195924..196493 (-) 570 WP_005034549.1 L-threonylcarbamoyladenylate synthase -
  RG306_RS00930 (RG306_00930) dprA 196541..197668 (-) 1128 WP_005034547.1 DNA-processing protein DprA Machinery gene
  RG306_RS00935 (RG306_00935) tsaP 197692..198843 (-) 1152 WP_005034545.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  RG306_RS00940 (RG306_00940) def 198967..199497 (+) 531 WP_004831951.1 peptide deformylase -
  RG306_RS00945 (RG306_00945) - 199566..200069 (+) 504 WP_370469256.1 DUF2946 family protein -
  RG306_RS00950 (RG306_00950) - 200152..202236 (+) 2085 WP_005034542.1 TonB-dependent copper receptor -
  RG306_RS00955 (RG306_00955) - 202262..202504 (+) 243 WP_005034540.1 DUF4199 domain-containing protein -
  RG306_RS00960 (RG306_00960) - 202599..203768 (+) 1170 WP_004831943.1 hypothetical protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41780.82 Da        Isoelectric Point: 9.0582

>NTDB_id=875745 RG306_RS00935 WP_005034545.1 197692..198843(-) (tsaP) [Acinetobacter bereziniae strain UCO-553]
MKKVLTGITGFHAKGFKKQLLAVTLCLSAGFTYMEMTHASPNVNPPALKSSAPNVYVVKRGDTLWDIAGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDKLLLCTLDGRPLIGVDEGDGCEGIIRRHQGGTSLRPQVRVESLNSAISVIPLSDIQPWLEHS
IVISPESLQNIPYTIGAADNRVITGAGQTVYARGNGLVVGQRYGIYREGKPYMFLNAEGKKFNAGLELSEVASAIATAGE
NDVTTLELTKSYNAEVRKGDYVLPSYDAELPSLFYPTTTNEVSTGGKVVRVQGSIGTAAQHSVVTIDRGNLQGAKPGQVF
SIYQQGEVVRDPKTKESVKLPSQQIGTLMIFKSFDHLSYAYILESNLPIKIGAEIKPPAITDQ

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=875745 RG306_RS00935 WP_005034545.1 197692..198843(-) (tsaP) [Acinetobacter bereziniae strain UCO-553]
ATGAAAAAGGTTTTAACTGGCATAACAGGTTTTCATGCCAAGGGGTTCAAGAAACAGTTACTTGCTGTGACACTATGTTT
AAGTGCAGGATTCACTTACATGGAAATGACACATGCAAGCCCAAATGTTAATCCACCTGCACTCAAATCCAGTGCACCCA
ATGTTTATGTGGTGAAACGTGGTGATACCTTATGGGATATCGCAGGGAAATTTTTAAGTAAGCCGTGGCGTTGGCCTGAA
ATCTGGGCAAGCAATAAACATGTTAAAAATCCACACTGGATTTATCCTGGCGATAAATTACTGTTATGTACTTTAGATGG
TCGTCCATTAATCGGCGTGGATGAAGGTGATGGTTGTGAGGGTATTATTCGTCGTCATCAAGGTGGAACATCTTTACGTC
CACAAGTACGTGTGGAGTCATTAAACAGTGCAATTTCGGTGATTCCTCTATCTGATATTCAACCGTGGCTAGAACACAGC
ATTGTCATCAGTCCTGAGTCTTTACAAAATATTCCTTATACCATTGGTGCTGCTGATAATCGTGTGATTACGGGTGCTGG
TCAAACCGTATATGCACGCGGAAATGGCTTAGTGGTAGGTCAGCGCTATGGCATTTACCGCGAAGGTAAACCTTATATGT
TCCTCAATGCGGAAGGTAAAAAGTTTAATGCGGGACTGGAGTTATCTGAAGTTGCTTCAGCAATCGCAACGGCGGGTGAA
AATGATGTCACCACACTTGAATTGACCAAGAGCTACAATGCCGAAGTTCGTAAAGGTGATTATGTTCTTCCTAGCTATGA
TGCAGAACTACCGAGCTTGTTCTATCCAACCACCACTAATGAAGTGAGTACTGGTGGTAAAGTGGTGCGTGTCCAAGGTT
CGATTGGTACAGCAGCGCAACACAGTGTGGTCACTATTGATCGCGGTAACTTACAAGGTGCGAAACCTGGACAAGTATTT
AGTATTTATCAACAAGGTGAAGTTGTTCGTGATCCAAAAACCAAGGAATCGGTAAAATTACCAAGTCAGCAAATTGGTAC
ACTGATGATTTTTAAAAGTTTTGATCATCTGAGTTATGCTTATATTTTAGAAAGCAACTTACCGATTAAAATAGGTGCTG
AGATCAAACCACCTGCGATTACAGATCAGTGA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9CWZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

63.021

100

0.632