Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RFF20_RS05730 Genome accession   NZ_CP133639
Coordinates   1222146..1223357 (-) Length   403 a.a.
NCBI ID   WP_324005463.1    Uniprot ID   -
Organism   Pasteurella multocida strain Past6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1217146..1228357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF20_RS05700 (RFF20_05700) raiA 1217922..1218239 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  RFF20_RS05705 (RFF20_05705) - 1218484..1219857 (-) 1374 WP_096743226.1 alanine/glycine:cation symporter family protein -
  RFF20_RS05710 (RFF20_05710) - 1220306..1220575 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  RFF20_RS05715 (RFF20_05715) yacG 1220575..1220778 (-) 204 WP_083004817.1 DNA gyrase inhibitor YacG -
  RFF20_RS05720 (RFF20_05720) coaE 1220789..1221409 (-) 621 WP_115097849.1 dephospho-CoA kinase -
  RFF20_RS05725 (RFF20_05725) - 1221421..1222146 (-) 726 WP_324005461.1 A24 family peptidase -
  RFF20_RS05730 (RFF20_05730) pilC 1222146..1223357 (-) 1212 WP_324005463.1 type II secretion system F family protein Machinery gene
  RFF20_RS05735 (RFF20_05735) pilB 1223357..1224742 (-) 1386 WP_324005464.1 GspE/PulE family protein Machinery gene
  RFF20_RS05740 (RFF20_05740) pilA 1224742..1225176 (-) 435 WP_083004804.1 prepilin peptidase-dependent pilin Machinery gene
  RFF20_RS05745 (RFF20_05745) ampD 1225336..1225902 (+) 567 WP_104227618.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  RFF20_RS05750 (RFF20_05750) rppH 1226488..1227084 (+) 597 WP_324005467.1 RNA pyrophosphohydrolase -
  RFF20_RS05755 (RFF20_05755) - 1227087..1227881 (+) 795 WP_083004796.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 45989.91 Da        Isoelectric Point: 9.7863

>NTDB_id=875417 RFF20_RS05730 WP_324005463.1 1222146..1223357(-) (pilC) [Pasteurella multocida strain Past6]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVQQLHLQRNWQLSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASNIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCAQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTSLLLLFIVPQFAEIYANQPLPAFTVLLLNVSAGLRGYAFQLSLLLIFGFIFLMLNVRQRVGLY
RLKNCLIHFLPIFKQIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHALTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=875417 RFF20_RS05730 WP_324005463.1 1222146..1223357(-) (pilC) [Pasteurella multocida strain Past6]
ATGAAAAAATTAAAAATGTTTCGCTGGAAAGGAATAAATCGATTACAACAAATACAAAAAGGCGTTATTGTAGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTCCAGCAACTGCATTTACAACGAAATTGGCAGCTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCTTCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCAATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTCGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCCACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGACGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACGTCGTTGTTACTGCTGTTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATGTATCGGCAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTTATTTTTTTGATGTTAAATGTGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGATTCATTTCCTTCCCATCTTTAAGCAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTACAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGCGCTTACCGAGATGCGACTTGCTGAAGAAGTCCAGTTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAGTTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATTTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.148

100

0.484
  pilC Haemophilus influenzae 86-028NP

47.901

100

0.481
  pilC Glaesserella parasuis strain SC1401

38.765

100

0.39