Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RFF38_RS09480 Genome accession   NZ_CP133638
Coordinates   1977370..1978899 (-) Length   509 a.a.
NCBI ID   WP_108511680.1    Uniprot ID   -
Organism   Pasteurella multocida strain Past9     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1972370..1983899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF38_RS09460 (RFF38_09460) - 1973675..1974358 (-) 684 WP_005718066.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  RFF38_RS09465 (RFF38_09465) envC 1974541..1975770 (+) 1230 WP_042742720.1 murein hydrolase activator EnvC -
  RFF38_RS09470 (RFF38_09470) - 1975767..1976609 (+) 843 WP_108511681.1 divergent polysaccharide deacetylase family protein -
  RFF38_RS09475 (RFF38_09475) - 1976630..1977316 (+) 687 WP_104884163.1 hypothetical protein -
  RFF38_RS09480 (RFF38_09480) comM 1977370..1978899 (-) 1530 WP_108511680.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RFF38_RS09485 (RFF38_09485) yihA 1979007..1979624 (-) 618 WP_005724253.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RFF38_RS09490 (RFF38_09490) - 1979735..1980604 (+) 870 WP_250023398.1 VirK/YbjX family protein -
  RFF38_RS09495 (RFF38_09495) trmL 1980678..1981154 (-) 477 WP_064965341.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  RFF38_RS09500 (RFF38_09500) - 1981312..1981638 (+) 327 WP_005725755.1 type II toxin-antitoxin system RelE/ParE family toxin -
  RFF38_RS09505 (RFF38_09505) - 1981718..1982044 (+) 327 WP_005757699.1 HigA family addiction module antitoxin -
  RFF38_RS09510 (RFF38_09510) - 1982099..1983619 (-) 1521 WP_249984417.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55909.33 Da        Isoelectric Point: 9.6875

>NTDB_id=875407 RFF38_RS09480 WP_108511680.1 1977370..1978899(-) (comM) [Pasteurella multocida strain Past9]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSHQDTYFAQHL
LEVVNFLNDHATLPLASDLPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAI

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=875407 RFF38_RS09480 WP_108511680.1 1977370..1978899(-) (comM) [Pasteurella multocida strain Past9]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCCCAATTTAAATACCCAGCTAAACGGATCACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGACCCACAAAAGTTACAGCAATTTGAATTTGT
GGGTGAGTTAGCGCTAACGGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCTTCGTTAGTTTCCCACCAAGACACCTATTTTGCTCAACATTTA
CTAGAGGTCGTCAATTTTCTCAATGATCATGCTACGTTACCTTTAGCCTCAGATCTGCCCACACAACATGATCCGGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCTTTAACCATTGCTGCCGCAG
GGCAACATAATCTGCTTTTTTTGGGTCCGCCTGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTGTTCATCATGAATTGAATTTTCATAATTGGAA
ACAGCGCCCATTTCGTGCCCCTCATCACAGTGCTTCAACACCGGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGAG
AAATTTCGCTCGCACACAATGGCGTGTTATTTCTTGATGAGTTACCGGAATTTGAACGCAAAGTATTGGATGCCTTACGC
CAACCTTTGGAAAGTGGTGAAATTATCATTTCACGTGCCAATGCAAAAATTCAATTCCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACGGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTACGTTATCTCA
ATCGCTTATCCGGTCCATTTTTAGATCGGTTTGATTTGTCAATCGAAGTCCCTTTACTCCCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACAAGTGAGAGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGCGCGGG
AAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAGA
ATGCCTTAGCCAAATTGGGGTTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGTCAAATTCAACAATGCCACCTCGCCGAAGCACTAGGTTATCGGGCGATGGATAGGTTGTTACAGAAGTTATC
TGCGATATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.615

99.607

0.843
  comM Glaesserella parasuis strain SC1401

77.909

99.607

0.776
  comM Vibrio cholerae strain A1552

66.208

100

0.662
  comM Vibrio campbellii strain DS40M4

65.748

99.804

0.656
  comM Legionella pneumophila str. Paris

51.8

98.232

0.509
  comM Legionella pneumophila strain ERS1305867

51.8

98.232

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.524

100

0.47