Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RFF38_RS06860 Genome accession   NZ_CP133638
Coordinates   1419510..1420721 (-) Length   403 a.a.
NCBI ID   WP_249984746.1    Uniprot ID   -
Organism   Pasteurella multocida strain Past9     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1414510..1425721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF38_RS06830 (RFF38_06830) raiA 1415286..1415603 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  RFF38_RS06835 (RFF38_06835) - 1415848..1417221 (-) 1374 WP_096743226.1 alanine/glycine:cation symporter family protein -
  RFF38_RS06840 (RFF38_06840) - 1417670..1417939 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  RFF38_RS06845 (RFF38_06845) yacG 1417939..1418142 (-) 204 WP_083004817.1 DNA gyrase inhibitor YacG -
  RFF38_RS06850 (RFF38_06850) coaE 1418153..1418773 (-) 621 WP_096743227.1 dephospho-CoA kinase -
  RFF38_RS06855 (RFF38_06855) - 1418785..1419510 (-) 726 WP_096743228.1 prepilin peptidase -
  RFF38_RS06860 (RFF38_06860) pilC 1419510..1420721 (-) 1212 WP_249984746.1 type II secretion system F family protein Machinery gene
  RFF38_RS06865 (RFF38_06865) pilB 1420721..1422109 (-) 1389 WP_115097850.1 GspE/PulE family protein Machinery gene
  RFF38_RS06870 (RFF38_06870) pilA 1422109..1422543 (-) 435 WP_115097851.1 prepilin peptidase-dependent pilin Machinery gene
  RFF38_RS06875 (RFF38_06875) ampD 1422703..1423269 (+) 567 WP_083004802.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  RFF38_RS06880 (RFF38_06880) rppH 1423855..1424451 (+) 597 WP_083004799.1 RNA pyrophosphohydrolase -
  RFF38_RS06885 (RFF38_06885) - 1424454..1425248 (+) 795 WP_083004796.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46186.16 Da        Isoelectric Point: 9.7864

>NTDB_id=875394 RFF38_RS06860 WP_249984746.1 1419510..1420721(-) (pilC) [Pasteurella multocida strain Past9]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQFSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASHIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCTQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNISTGLRGYAFQLSLLLIFSFIFLMLNVRQRVGLY
RLKNCLLHFIPIFKQIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHALTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=875394 RFF38_RS06860 WP_249984746.1 1419510..1420721(-) (pilC) [Pasteurella multocida strain Past9]
ATGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAACAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTGCATTTACAACGAAATTGGCAGTTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCTTCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCCATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTCGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCTACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTACACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGGCGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTATTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATATATCGACAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCAGCTTCATTTTTTTGATGTTAAATGTGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCATTCCCATCTTTAAGCAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTACAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGCGCTTACCGAGATGCGACTTGCTGAAGAAGTCCAATTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATCTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.642

100

0.489
  pilC Haemophilus influenzae 86-028NP

48.395

100

0.486
  pilC Glaesserella parasuis strain SC1401

39.012

100

0.392