Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RFF39_RS08745 Genome accession   NZ_CP133634
Coordinates   1860534..1862063 (-) Length   509 a.a.
NCBI ID   WP_005757692.1    Uniprot ID   -
Organism   Pasteurella multocida strain Past33     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1855534..1867063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF39_RS08725 (RFF39_08725) - 1856827..1857510 (-) 684 WP_005718066.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  RFF39_RS08730 (RFF39_08730) envC 1857693..1858922 (+) 1230 WP_323997437.1 murein hydrolase activator EnvC -
  RFF39_RS08735 (RFF39_08735) - 1858919..1859761 (+) 843 WP_323997439.1 divergent polysaccharide deacetylase family protein -
  RFF39_RS08740 (RFF39_08740) - 1859782..1860468 (+) 687 WP_323997440.1 hypothetical protein -
  RFF39_RS08745 (RFF39_08745) comM 1860534..1862063 (-) 1530 WP_005757692.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RFF39_RS08750 (RFF39_08750) yihA 1862171..1862788 (-) 618 WP_005755089.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RFF39_RS08755 (RFF39_08755) - 1862899..1863768 (+) 870 WP_005755091.1 VirK/YbjX family protein -
  RFF39_RS08760 (RFF39_08760) trmL 1863843..1864319 (-) 477 WP_005755093.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  RFF39_RS08765 (RFF39_08765) - 1864476..1864802 (+) 327 WP_032854112.1 type II toxin-antitoxin system RelE/ParE family toxin -
  RFF39_RS08770 (RFF39_08770) - 1864896..1865222 (+) 327 WP_005757699.1 HigA family addiction module antitoxin -
  RFF39_RS08775 (RFF39_08775) - 1865276..1866796 (-) 1521 WP_323997444.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55962.40 Da        Isoelectric Point: 9.6874

>NTDB_id=875361 RFF39_RS08745 WP_005757692.1 1860534..1862063(-) (comM) [Pasteurella multocida strain Past33]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSQQDTYFAQHL
LEVVNFLNDHTTLPLASELPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=875361 RFF39_RS08745 WP_005757692.1 1860534..1862063(-) (comM) [Pasteurella multocida strain Past33]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAGACCGTCAAAGAAGCACAAGATCGCGTACGCAGCGCCTTGC
TCAATGCTCAATTTAAATATCCCGCTAAACGGATCACGGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGATCCACAAAAGTTACAACAATTTGAATTTGT
GGGTGAGTTAGCGCTAACCGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTTCCCAGCAAGACACCTATTTTGCGCAACATTTA
TTAGAAGTCGTCAATTTCCTCAATGATCATACCACGTTACCTTTAGCCTCAGAACTGCCTACACAACATGATCCAGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCCTTAACTATTGCTGCCGCAG
GACAACATAATCTGCTTTTTTTGGGTCCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTGTTCATCATGAATTGAATTTTCATAATTGGAA
ACAACGCCCATTCCGTGCCCCTCATCACAGCGCTTCAACACCAGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGTG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTCGATGAGTTACCAGAATTTGAACGTAAAGTATTAGATGCCTTACGT
CAACCTTTGGAAAGTGGTGAAATTATAATTTCGCGTGCCAATGCAAAAATTCAATTCCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACGGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTGCGTTATCTCA
ATCGCTTATCCGGTCCGTTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTACCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACAAGTGAGAGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGTGCGGG
AAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAAA
ATGCCTTAGCTAAATTGGGGTTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGCCAAATTCAACAATGCCACCTCGCCGAAGCACTGGGTTATCGGGCGATGGATAGGCTGTTACAGAAGTTATC
TGCGATGTAG

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.676

100

0.847
  comM Glaesserella parasuis strain SC1401

77.909

99.607

0.776
  comM Vibrio cholerae strain A1552

66.208

100

0.662
  comM Vibrio campbellii strain DS40M4

65.116

100

0.66
  comM Legionella pneumophila str. Paris

51.8

98.232

0.509
  comM Legionella pneumophila strain ERS1305867

51.8

98.232

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.524

100

0.47