Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RFF25_RS08505 Genome accession   NZ_CP133633
Coordinates   1818100..1819629 (-) Length   509 a.a.
NCBI ID   WP_061406324.1    Uniprot ID   -
Organism   Pasteurella multocida strain Pm1618     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1813100..1824629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF25_RS08485 (RFF25_08480) - 1814405..1815088 (-) 684 WP_005718066.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  RFF25_RS08490 (RFF25_08485) envC 1815271..1816500 (+) 1230 WP_193757066.1 murein hydrolase activator EnvC -
  RFF25_RS08495 (RFF25_08490) - 1816497..1817339 (+) 843 WP_061406322.1 divergent polysaccharide deacetylase family protein -
  RFF25_RS08500 (RFF25_08495) - 1817360..1818046 (+) 687 WP_061406323.1 hypothetical protein -
  RFF25_RS08505 (RFF25_08500) comM 1818100..1819629 (-) 1530 WP_061406324.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RFF25_RS08510 (RFF25_08505) yihA 1819738..1820355 (-) 618 WP_005724253.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RFF25_RS08515 (RFF25_08510) - 1820466..1821335 (+) 870 WP_061406325.1 VirK/YbjX family protein -
  RFF25_RS08520 (RFF25_08515) trmL 1821409..1821885 (-) 477 WP_042742721.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  RFF25_RS08525 (RFF25_08520) - 1822043..1822369 (+) 327 WP_005725755.1 type II toxin-antitoxin system RelE/ParE family toxin -
  RFF25_RS08530 (RFF25_08525) - 1822449..1822775 (+) 327 WP_005757699.1 HigA family addiction module antitoxin -
  RFF25_RS08535 (RFF25_08530) - 1822830..1824350 (-) 1521 WP_083003944.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55939.35 Da        Isoelectric Point: 9.6875

>NTDB_id=875339 RFF25_RS08505 WP_061406324.1 1818100..1819629(-) (comM) [Pasteurella multocida strain Pm1618]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSHQDTYFAQHL
LEVVNFLNDHTTLPLASDLPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAI

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=875339 RFF25_RS08505 WP_061406324.1 1818100..1819629(-) (comM) [Pasteurella multocida strain Pm1618]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCCCAATTTAAATACCCAGCTAAACGGATCACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAGGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGACCCACAAAAGTTACAGCAATTTGAATTTGT
GGGTGAGTTAGCGCTAACGGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCTTCGTTAGTTTCCCACCAAGACACCTATTTTGCTCAACATTTA
CTAGAGGTCGTCAATTTCCTCAATGATCATACTACGTTACCTTTAGCCTCAGATCTGCCCACACAACATGATCCGGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCTTTAACCATTGCTGCCGCAG
GGCAACATAATCTGCTTTTTTTGGGTCCGCCTGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTGTTCATCATGAATTGAATTTTCATAATTGGAA
ACAGCGCCCATTTCGTGCCCCTCATCACAGTGCTTCAACACCGGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGAG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTTGATGAGTTACCGGAATTTGAACGCAAAGTATTGGATGCCTTACGC
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTCCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACGGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTACGTTATCTCA
ATCGCTTATCCGGTCCATTTTTAGATCGGTTTGATTTGTCAATCGAAGTCCCTTTACTCCCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACAAGTGAGAGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGCGCGGG
AAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAGA
ATGCCTTAGCCAAATTGGGGTTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGTCAAATTCAACAATGCCACCTCGCCGAAGCACTAGGTTATCGGGCGATGGATAGGTTGTTACAGAAGTTATC
TGCGATATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.615

99.607

0.843
  comM Glaesserella parasuis strain SC1401

77.909

99.607

0.776
  comM Vibrio cholerae strain A1552

66.208

100

0.662
  comM Vibrio campbellii strain DS40M4

65.748

99.804

0.656
  comM Legionella pneumophila str. Paris

52

98.232

0.511
  comM Legionella pneumophila strain ERS1305867

52

98.232

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.524

100

0.47