Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RFF25_RS05935 Genome accession   NZ_CP133633
Coordinates   1268931..1270142 (-) Length   403 a.a.
NCBI ID   WP_083004809.1    Uniprot ID   -
Organism   Pasteurella multocida strain Pm1618     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1263931..1275142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF25_RS05905 (RFF25_05900) raiA 1264707..1265024 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  RFF25_RS05910 (RFF25_05905) - 1265269..1266642 (-) 1374 WP_083004820.1 alanine/glycine:cation symporter family protein -
  RFF25_RS05915 (RFF25_05910) - 1267091..1267360 (-) 270 WP_250190736.1 GNAT family N-acetyltransferase -
  RFF25_RS05920 (RFF25_05915) yacG 1267360..1267563 (-) 204 WP_083004817.1 DNA gyrase inhibitor YacG -
  RFF25_RS05925 (RFF25_05920) coaE 1267574..1268194 (-) 621 WP_083004815.1 dephospho-CoA kinase -
  RFF25_RS05930 (RFF25_05925) - 1268206..1268931 (-) 726 WP_083004812.1 prepilin peptidase -
  RFF25_RS05935 (RFF25_05930) pilC 1268931..1270142 (-) 1212 WP_083004809.1 type II secretion system F family protein Machinery gene
  RFF25_RS05940 (RFF25_05935) pilB 1270142..1271527 (-) 1386 WP_083004806.1 GspE/PulE family protein Machinery gene
  RFF25_RS05945 (RFF25_05940) pilA 1271527..1271961 (-) 435 WP_083004804.1 prepilin peptidase-dependent pilin Machinery gene
  RFF25_RS05950 (RFF25_05945) ampD 1272121..1272687 (+) 567 WP_083004802.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  RFF25_RS05955 (RFF25_05950) rppH 1273273..1273869 (+) 597 WP_083004799.1 RNA pyrophosphohydrolase -
  RFF25_RS05960 (RFF25_05955) - 1273872..1274666 (+) 795 WP_083004796.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46018.91 Da        Isoelectric Point: 9.7864

>NTDB_id=875326 RFF25_RS05935 WP_083004809.1 1268931..1270142(-) (pilC) [Pasteurella multocida strain Pm1618]
MNKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQFSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASNIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCAQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTSLLLLFIVPQFAEIYANQPLPAFTVLLLNVSAGLRGYAFQLSLLLIFGFIFLMLNVRQRVGLY
RLKNCLIHFLPIFKKIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHALTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=875326 RFF25_RS05935 WP_083004809.1 1268931..1270142(-) (pilC) [Pasteurella multocida strain Pm1618]
ATGAATAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAACAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTGCATTTACAACGAAATTGGCAGTTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGTTATTACAAGCTTCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCAATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTCGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCCACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGACGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACGTCGTTGTTACTGCTGTTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATGTATCGGCAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTTATTTTTTTGATGTTAAATGTGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGATTCATTTCCTTCCCATCTTTAAGAAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTACAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGCGCTTACCGAGATGCGACTTGCTGAAGAAGTCCAGTTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAGTTGTTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATTTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.395

100

0.486
  pilC Haemophilus influenzae 86-028NP

48.148

100

0.484
  pilC Glaesserella parasuis strain SC1401

38.765

100

0.39