Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RFF30_RS08340 Genome accession   NZ_CP133632
Coordinates   1811148..1812677 (-) Length   509 a.a.
NCBI ID   WP_005757692.1    Uniprot ID   -
Organism   Pasteurella multocida strain Pm1621     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1806148..1817677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF30_RS08320 (RFF30_08320) - 1807453..1808136 (-) 684 WP_005718066.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  RFF30_RS08325 (RFF30_08325) envC 1808319..1809548 (+) 1230 WP_010907196.1 murein hydrolase activator EnvC -
  RFF30_RS08330 (RFF30_08330) - 1809545..1810387 (+) 843 WP_046333610.1 divergent polysaccharide deacetylase family protein -
  RFF30_RS08335 (RFF30_08335) - 1810408..1811094 (+) 687 WP_010907198.1 hypothetical protein -
  RFF30_RS08340 (RFF30_08340) comM 1811148..1812677 (-) 1530 WP_005757692.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RFF30_RS08345 (RFF30_08345) yihA 1812785..1813402 (-) 618 WP_005718080.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RFF30_RS08350 (RFF30_08350) - 1813513..1814382 (+) 870 WP_078737926.1 VirK/YbjX family protein -
  RFF30_RS08355 (RFF30_08355) trmL 1814457..1814933 (-) 477 WP_005755093.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  RFF30_RS08360 (RFF30_08360) - 1815079..1816074 (-) 996 WP_324007029.1 hypothetical protein -
  RFF30_RS08365 (RFF30_08365) - 1816097..1817617 (-) 1521 WP_324007030.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55962.40 Da        Isoelectric Point: 9.6874

>NTDB_id=875316 RFF30_RS08340 WP_005757692.1 1811148..1812677(-) (comM) [Pasteurella multocida strain Pm1621]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSQQDTYFAQHL
LEVVNFLNDHTTLPLASELPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=875316 RFF30_RS08340 WP_005757692.1 1811148..1812677(-) (comM) [Pasteurella multocida strain Pm1621]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAGACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCTCAATTTAAATACCCCGCTAAACGGATCACGGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGACCCACAAAAGTTACAACAATTTGAATTTGT
GGGTGAGTTAGCGCTAACCGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTTCCCAGCAAGACACCTATTTTGCGCAACATTTA
TTAGAAGTCGTCAATTTCCTCAATGATCATACCACGTTACCTTTAGCCTCAGAACTGCCTACACAACATGATCCAGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCCTTAACTATTGCTGCCGCAG
GACAACATAATCTGCTTTTTTTGGGACCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTGTTCATCATGAATTGAATTTTCATAATTGGAA
ACAACGCCCATTTCGTGCCCCTCATCACAGCGCTTCAACACCGGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGTG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTCGATGAGTTACCGGAATTTGAACGTAAAGTATTAGATGCCTTACGT
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTTCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACAGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTGCGTTATCTCA
ATCGCTTATCCGGTCCATTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTACCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACAAGTGAGGGAAAAAGTATTAAAAGTACGCGACATACAACTGGCTCGCGCGGG
GAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAAA
ATGCCTTAGCTAAATTGGGATTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGCCAAATTCAACAATGCCACCTCGCCGAAGCACTGGGTTATCGGGCGATGGATAGGTTGTTACAGAAGTTATC
TGCGATGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.676

100

0.847
  comM Glaesserella parasuis strain SC1401

77.909

99.607

0.776
  comM Vibrio cholerae strain A1552

66.208

100

0.662
  comM Vibrio campbellii strain DS40M4

65.116

100

0.66
  comM Legionella pneumophila str. Paris

51.8

98.232

0.509
  comM Legionella pneumophila strain ERS1305867

51.8

98.232

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.524

100

0.47