Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   WID27_RS33325 Genome accession   NZ_CP149796
Coordinates   7668370..7670493 (-) Length   707 a.a.
NCBI ID   WP_339153974.1    Uniprot ID   -
Organism   Streptomyces sp. F41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7663370..7675493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WID27_RS33310 (WID27_33310) - 7663859..7664284 (+) 426 WP_070202633.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  WID27_RS33315 (WID27_33315) - 7664743..7666914 (-) 2172 WP_339153970.1 FUSC family protein -
  WID27_RS33320 (WID27_33320) - 7667060..7668181 (-) 1122 WP_339153972.1 hypothetical protein -
  WID27_RS33325 (WID27_33325) uvrA 7668370..7670493 (-) 2124 WP_339153974.1 excinuclease ABC subunit UvrA Machinery gene
  WID27_RS36110 - 7670770..7670922 (-) 153 WP_078533284.1 IS3 family transposase -
  WID27_RS33330 (WID27_33330) - 7671476..7672750 (-) 1275 WP_339155050.1 APC family permease -
  WID27_RS33335 (WID27_33335) - 7672943..7674346 (-) 1404 WP_339153976.1 NAD(P)-binding domain-containing protein -
  WID27_RS33340 (WID27_33340) - 7674572..7674715 (+) 144 WP_339153978.1 hypothetical protein -
  WID27_RS33345 (WID27_33345) - 7674931..7675305 (+) 375 WP_032788489.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 76017.20 Da        Isoelectric Point: 6.2779

>NTDB_id=875279 WID27_RS33325 WP_339153974.1 7668370..7670493(-) (uvrA) [Streptomyces sp. F41]
MLYSRAGTYPPGAARLDAESFSPNTAAGACPECHGLGVVHDVAEDLLVPDHSLSIREGAIAAWPGAWQGANLRSIVNGLG
IDIDRPWRRLKKKDREWLLYTDEQPSVYIEPEEDRVDYGYQGKFWSARKHIMHVLADSKSEKMRERALRFVRSVPCPECH
GSGLRPEALAVTFAGQSIAQVNAMPLTEVAALLRPVARRSEADATTSTARSGETTEVAVRICGDLVARVAVLLDLGLGYL
SLGRRSTTLSPGEAQRLRIATQLRSGLFGVVYVLDEPSAGLHPADAEPLLDVLESLKAAGNSLFVVEHDMDVVRRADWVV
DIGPGAGEGGGRVLYSGPVAGLEQVEESATSRYLFGRAEPLEHRPRTPHGWLHLSGVSRHNLRDVSVDVPLCVLTAVTGM
SGSGKSTLVTQVLAEVVRGHLGLGPEDLDEARLEVDVQDASGVESFDRVVRVDQRPIGRTPRSNLATYTKMFDAVRKLYA
ATDEARARGYTAGRFSFNVPEGRCETCQGEGFVAVELLFLPGTYAPCPTCQGARYNAETLEVTYRGKNIAEVLGLSVDAA
AEFLSAVPAAARSLETLREVGLGYLRLGQPATELSGGEAQRIKLATELQRARRGHALYLLDEPTAGLHPSDIALLLRQLH
RLVDAGNTVVLVEHDLDTITTADWVIDLGPGGGDAGGRVVAAGPPAKVAKARRSATAPYLAARLARS

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=875279 WID27_RS33325 WP_339153974.1 7668370..7670493(-) (uvrA) [Streptomyces sp. F41]
ATGCTGTACTCCCGCGCCGGCACCTATCCGCCCGGAGCCGCACGGCTGGATGCCGAGTCGTTCTCACCGAACACCGCGGC
CGGGGCCTGCCCGGAGTGCCACGGACTGGGCGTTGTCCACGATGTCGCCGAGGACCTCCTTGTCCCGGACCACTCGCTGA
GTATCCGAGAGGGGGCGATCGCCGCCTGGCCGGGCGCCTGGCAGGGGGCCAACCTGCGCAGCATCGTCAATGGCCTGGGG
ATCGACATCGACCGACCGTGGCGCAGGCTCAAGAAGAAGGACCGGGAATGGCTGCTGTACACGGACGAACAGCCCTCCGT
CTACATCGAGCCGGAGGAGGACCGCGTCGACTACGGCTACCAGGGCAAGTTCTGGAGCGCCCGTAAGCACATCATGCACG
TCCTTGCCGACTCCAAGAGCGAGAAGATGCGCGAACGGGCGCTCCGGTTCGTCAGGAGCGTGCCATGCCCCGAGTGCCAC
GGCAGCGGACTGCGTCCCGAGGCGCTCGCCGTGACCTTCGCCGGACAGTCCATCGCCCAGGTCAACGCGATGCCGCTCAC
CGAGGTCGCGGCGCTGCTGCGGCCCGTCGCACGGCGGTCCGAGGCCGACGCCACCACTTCCACCGCCCGGTCCGGGGAAA
CGACCGAGGTCGCGGTCCGGATCTGCGGCGATCTGGTCGCGCGGGTCGCCGTACTGCTCGACCTGGGCCTGGGATATCTC
AGCCTCGGGCGCCGCTCGACGACCCTGTCGCCCGGCGAGGCGCAACGCCTACGGATCGCCACACAACTGCGCTCGGGGCT
GTTCGGCGTCGTCTACGTCCTCGACGAACCCTCCGCGGGCCTGCACCCGGCTGACGCGGAACCGCTGCTGGACGTGCTGG
AGAGCCTCAAGGCGGCGGGCAACTCACTGTTCGTCGTGGAGCACGACATGGACGTCGTACGGCGGGCGGACTGGGTGGTC
GACATCGGACCCGGCGCCGGTGAGGGCGGCGGGCGCGTGCTGTACAGCGGCCCCGTCGCCGGTCTTGAGCAGGTGGAGGA
GTCGGCCACGAGCCGGTATCTGTTCGGGCGCGCCGAGCCACTCGAACACCGGCCGCGCACACCGCATGGCTGGCTGCACC
TGAGCGGAGTGTCCCGCCACAATCTGCGTGACGTGTCCGTGGACGTACCGCTGTGCGTACTGACGGCGGTGACGGGTATG
TCCGGTTCCGGAAAGTCGACGCTGGTCACGCAGGTCCTCGCCGAGGTCGTGCGAGGCCACCTCGGACTCGGGCCCGAGGA
TCTTGACGAGGCACGACTGGAGGTAGACGTGCAGGACGCGTCTGGGGTCGAGTCGTTCGACCGGGTGGTCCGGGTCGACC
AACGGCCCATCGGGCGTACTCCGCGGTCCAACCTTGCCACGTACACGAAGATGTTCGACGCGGTGCGCAAGCTGTATGCG
GCGACGGACGAGGCCAGGGCGCGCGGCTACACGGCCGGCCGGTTCTCTTTCAACGTGCCCGAAGGGCGGTGCGAGACCTG
TCAGGGCGAAGGATTCGTCGCGGTGGAACTGCTGTTCCTGCCTGGTACCTACGCACCGTGCCCGACTTGCCAGGGCGCCC
GGTACAACGCCGAAACGCTGGAAGTCACCTACCGCGGCAAGAACATCGCGGAAGTGCTGGGGCTGTCCGTCGACGCCGCC
GCCGAGTTCCTTTCCGCCGTCCCGGCCGCCGCCCGCAGTCTGGAGACGTTGCGCGAGGTGGGACTGGGGTACCTGCGGCT
GGGGCAGCCCGCCACGGAGCTCAGCGGCGGTGAGGCGCAGCGCATCAAACTGGCCACCGAGCTGCAGCGAGCCCGCCGCG
GCCACGCGCTCTACCTGCTCGACGAACCGACAGCGGGCCTGCACCCCTCGGACATCGCGCTGCTGCTGCGCCAGCTGCAC
CGCCTCGTCGACGCGGGCAACACGGTCGTCCTCGTCGAGCACGACCTGGACACGATCACCACCGCCGACTGGGTCATCGA
TCTCGGGCCGGGCGGCGGCGACGCGGGCGGACGGGTGGTCGCGGCGGGCCCGCCGGCCAAGGTCGCGAAGGCCCGCCGCA
GCGCCACCGCGCCCTATCTCGCGGCCCGGCTCGCGCGCTCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(45-147)

ABC transporter (ABC_tran)

(382-625)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

40.773

98.868

0.403
  uvrA Streptococcus pneumoniae TIGR4

40.773

98.868

0.403
  uvrA Streptococcus pneumoniae D39

40.773

98.868

0.403