Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RE628_RS15015 Genome accession   NZ_CP133605
Coordinates   2950924..2951220 (-) Length   98 a.a.
NCBI ID   WP_309159474.1    Uniprot ID   -
Organism   Paenibacillus sp. D2_2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2945924..2956220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE628_RS14995 (RE628_14995) - 2946223..2947104 (-) 882 WP_309153857.1 carbohydrate ABC transporter permease -
  RE628_RS15000 (RE628_15000) - 2947122..2948015 (-) 894 WP_309153858.1 sugar ABC transporter permease -
  RE628_RS15005 (RE628_15005) - 2948114..2949484 (-) 1371 WP_309153859.1 extracellular solute-binding protein -
  RE628_RS15010 (RE628_15010) - 2949677..2950900 (-) 1224 WP_309153860.1 MFS transporter -
  RE628_RS15015 (RE628_15015) rcrQ 2950924..2951220 (-) 297 WP_309159474.1 hypothetical protein Regulator
  RE628_RS15020 (RE628_15020) - 2951196..2952719 (-) 1524 WP_309153861.1 ABC transporter ATP-binding protein -
  RE628_RS15025 (RE628_15025) - 2952824..2953377 (-) 554 Protein_2940 MarR family winged helix-turn-helix transcriptional regulator -
  RE628_RS15030 (RE628_15030) cysI 2953591..2955313 (-) 1723 Protein_2941 assimilatory sulfite reductase (NADPH) hemoprotein subunit -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11101.92 Da        Isoelectric Point: 7.2755

>NTDB_id=875269 RE628_RS15015 WP_309159474.1 2950924..2951220(-) (rcrQ) [Paenibacillus sp. D2_2]
MSIARAFLTNPRILILDEATAALDTESEQYIQRALSMLLPGRTCLVIAHRLSTIQSADQIVVLEHGQIMELGNHETLLRQ
KGRYKALYDMQFPAKSIY

Nucleotide


Download         Length: 297 bp        

>NTDB_id=875269 RE628_RS15015 WP_309159474.1 2950924..2951220(-) (rcrQ) [Paenibacillus sp. D2_2]
CTGTCCATTGCCAGAGCCTTCTTGACCAATCCTCGTATCCTCATTCTGGACGAAGCTACGGCGGCTCTTGATACGGAGTC
GGAACAGTATATCCAGCGTGCGTTGTCCATGCTTTTGCCAGGGCGTACCTGTCTGGTTATTGCCCATCGGCTTTCGACGA
TTCAAAGTGCAGATCAAATCGTTGTCCTGGAGCATGGACAGATCATGGAGCTGGGGAATCATGAGACACTGCTGCGGCAA
AAGGGAAGATACAAGGCGCTGTATGATATGCAATTTCCGGCGAAATCTATCTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.174

93.878

0.49
  comA Streptococcus mitis NCTC 12261

43.82

90.816

0.398
  comA Streptococcus mitis SK321

43.82

90.816

0.398
  comA Streptococcus pneumoniae Rx1

42.697

90.816

0.388
  comA Streptococcus pneumoniae D39

42.697

90.816

0.388
  comA Streptococcus pneumoniae R6

42.697

90.816

0.388
  comA Streptococcus pneumoniae TIGR4

42.697

90.816

0.388
  comA Streptococcus gordonii str. Challis substr. CH1

41.573

90.816

0.378
  comA/nlmT Streptococcus mutans UA159

40.449

90.816

0.367