Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RE468_RS01395 Genome accession   NZ_CP133598
Coordinates   285655..287175 (-) Length   506 a.a.
NCBI ID   WP_014003031.1    Uniprot ID   A0A1E7YJ12
Organism   MAG: Acidithiobacillus caldus isolate BR_03     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 280655..292175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE468_RS01370 (RE468_01370) ilvN 281895..282389 (+) 495 WP_014003034.1 acetolactate synthase small subunit -
  RE468_RS01375 (RE468_01375) ilvC 282432..283448 (+) 1017 WP_004872383.1 ketol-acid reductoisomerase -
  RE468_RS01380 (RE468_01380) - 283566..284228 (+) 663 WP_004872382.1 phosphatidylserine decarboxylase -
  RE468_RS01385 (RE468_01385) pssA 284225..284974 (+) 750 WP_070114783.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  RE468_RS01390 (RE468_01390) - 284986..285639 (-) 654 WP_014003032.1 YidH family protein -
  RE468_RS01395 (RE468_01395) comM 285655..287175 (-) 1521 WP_014003031.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RE468_RS01400 (RE468_01400) - 287179..287454 (-) 276 WP_014003030.1 accessory factor UbiK family protein -
  RE468_RS01405 (RE468_01405) - 287465..288652 (-) 1188 WP_070114784.1 FAD-dependent monooxygenase -
  RE468_RS01410 (RE468_01410) - 288639..289904 (-) 1266 WP_070114785.1 FAD-dependent monooxygenase -
  RE468_RS01415 (RE468_01415) - 289985..290767 (+) 783 WP_070114786.1 TatD family hydrolase -
  RE468_RS01420 (RE468_01420) - 290772..291521 (+) 750 WP_014003026.1 ThiF family adenylyltransferase -
  RE468_RS01425 (RE468_01425) - 291591..291983 (+) 393 WP_004872370.1 SCP2 sterol-binding domain-containing protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53991.00 Da        Isoelectric Point: 7.7577

>NTDB_id=875244 RE468_RS01395 WP_014003031.1 285655..287175(-) (comM) [MAG: Acidithiobacillus caldus isolate BR_03]
MPLAIVQSRAVAGIQGAEVVVECDLGPGLPTFAVVGLAETAVKEARDRVRSAIQNSGLDFPARRIVVNLAPADLPKEGGR
FDLPIALGILAASGQIPMTALTATECIGELALDGGLRPVPGALSAALAASSAGRELLLPRANADEAVLAEGAVIRAAATL
AQAVAHLRGQPHLPAWEATHGPATEPETLAEALPDLADVRGQEMVKRALVVAALGGHHLLLSGPPGTGKSMLAMRLPGLL
PPLQRDEAMEVAALHSLHGSFESRHWRRRPFRSPHHSASAAALVGGGSRPKPGEISLAHGGVLFLDELPEFPRAVLEALR
EPLETGEIHISRANRHTCYPARFQLVAAMNPCPCGHLGNPREACRCTPAQIQQYRGRLSGPLLDRIDIQVEVPALPIEAL
QQKESGPDSAYWRERIGAARERQMLRQGCLNGQLQGKALDRQVTLAPADRSFLERAAQSLAFSARAYHRVLRVARSIADL
EARDSIHREDLAEAIQYRRLALSLGH

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=875244 RE468_RS01395 WP_014003031.1 285655..287175(-) (comM) [MAG: Acidithiobacillus caldus isolate BR_03]
GTGCCCCTGGCAATCGTTCAGAGTCGTGCGGTTGCCGGCATTCAGGGCGCCGAAGTGGTGGTGGAGTGTGATCTCGGACC
AGGTCTGCCCACCTTCGCCGTCGTGGGGCTTGCCGAAACGGCGGTGAAAGAGGCCCGCGACCGGGTGCGCTCGGCCATCC
AGAACAGTGGCCTCGACTTTCCGGCGCGGCGCATCGTCGTCAACCTCGCCCCGGCGGACCTACCCAAGGAGGGGGGTCGC
TTCGATCTACCCATCGCCCTGGGCATCCTCGCCGCCAGCGGTCAGATCCCCATGACCGCCCTCACGGCCACGGAGTGCAT
CGGTGAGTTGGCTCTGGACGGTGGTCTGCGCCCGGTGCCCGGTGCCCTGAGTGCTGCCCTGGCCGCCAGTAGTGCGGGCC
GGGAATTGCTCTTGCCTCGGGCCAATGCCGATGAAGCCGTTCTGGCCGAGGGTGCGGTCATCCGCGCTGCGGCCACCTTG
GCACAGGCCGTGGCCCATCTACGAGGACAACCGCACCTGCCAGCATGGGAAGCCACCCATGGTCCGGCAACGGAGCCGGA
AACCTTGGCCGAGGCCTTGCCCGATCTTGCCGACGTGCGGGGCCAGGAGATGGTCAAGCGGGCGCTGGTGGTCGCTGCTC
TGGGTGGTCATCATTTGCTTTTGTCGGGTCCTCCGGGTACCGGCAAGAGTATGCTGGCCATGCGCTTACCGGGCCTCCTG
CCGCCCCTGCAACGGGACGAGGCCATGGAGGTTGCTGCCCTGCACAGTCTGCACGGCAGCTTCGAGAGTCGCCACTGGCG
GCGCCGGCCCTTTCGCAGTCCACACCACAGTGCCTCCGCTGCGGCGCTGGTGGGCGGCGGATCGCGTCCCAAACCGGGCG
AGATCAGCCTCGCCCACGGCGGTGTACTTTTTCTGGACGAACTGCCAGAATTTCCGCGGGCCGTACTCGAGGCCCTGCGG
GAACCTCTGGAAACGGGTGAGATTCACATTTCTCGGGCCAATCGACACACCTGCTACCCGGCCCGCTTTCAGTTGGTGGC
GGCCATGAATCCCTGCCCTTGCGGTCATCTGGGCAACCCGCGGGAGGCCTGCCGCTGCACACCCGCCCAGATTCAGCAGT
ACCGCGGCCGGCTCTCGGGGCCGCTTTTGGATCGTATCGACATTCAGGTTGAGGTACCCGCTTTGCCCATCGAAGCACTC
CAGCAGAAGGAATCGGGCCCGGATTCGGCGTATTGGCGCGAGCGCATCGGTGCTGCTCGTGAGCGGCAGATGCTGCGTCA
GGGCTGCCTCAACGGACAGCTCCAGGGCAAGGCCCTGGATCGGCAGGTGACTCTGGCACCGGCAGATCGCAGTTTTCTGG
AGCGCGCCGCGCAGAGCCTCGCATTCTCGGCACGAGCCTACCATCGGGTGCTGCGGGTGGCACGCAGCATTGCCGACCTG
GAGGCAAGGGACTCGATACACCGGGAAGACCTGGCCGAAGCCATCCAGTACCGCCGCCTGGCTCTGAGCCTTGGGCACTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-498)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E7YJ12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.094

99.012

0.526
  comM Haemophilus influenzae Rd KW20

53.094

99.012

0.526
  comM Vibrio cholerae strain A1552

52.8

98.814

0.522
  comM Glaesserella parasuis strain SC1401

52.495

99.012

0.52
  comM Legionella pneumophila str. Paris

49.203

99.209

0.488
  comM Legionella pneumophila strain ERS1305867

49.203

99.209

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.801

100

0.429