Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RFB13_RS26120 Genome accession   NZ_CP133586
Coordinates   5673646..5675169 (+) Length   507 a.a.
NCBI ID   WP_309205566.1    Uniprot ID   -
Organism   Serratia fonticola strain NEB369     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5668646..5680169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFB13_RS26095 (RFB13_26095) ilvE 5668848..5669774 (-) 927 WP_021181823.1 branched-chain-amino-acid transaminase -
  RFB13_RS26100 (RFB13_26100) ilvM 5669796..5670053 (-) 258 WP_021181824.1 acetolactate synthase 2 small subunit -
  RFB13_RS26105 (RFB13_26105) ilvG 5670050..5671696 (-) 1647 WP_024527666.1 acetolactate synthase 2 catalytic subunit -
  RFB13_RS26110 (RFB13_26110) ilvL 5671838..5671936 (-) 99 WP_071681478.1 ilv operon leader peptide -
  RFB13_RS26115 (RFB13_26115) - 5672070..5673302 (-) 1233 WP_309205565.1 MFS transporter -
  RFB13_RS26120 (RFB13_26120) comM 5673646..5675169 (+) 1524 WP_309205566.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RFB13_RS26125 (RFB13_26125) - 5675198..5675536 (-) 339 WP_021181829.1 DUF413 domain-containing protein -
  RFB13_RS26130 (RFB13_26130) hdfR 5675656..5676483 (+) 828 WP_065683942.1 HTH-type transcriptional regulator HdfR -
  RFB13_RS26135 (RFB13_26135) yjfF 5676488..5677480 (-) 993 WP_037376500.1 galactofuranose ABC transporter, permease protein YjfF -
  RFB13_RS26140 (RFB13_26140) ytfT 5677477..5678478 (-) 1002 WP_161712946.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  RFB13_RS26145 (RFB13_26145) ytfR 5678496..5680010 (-) 1515 WP_065683940.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54594.88 Da        Isoelectric Point: 7.7617

>NTDB_id=875154 RFB13_RS26120 WP_309205566.1 5673646..5675169(+) (comM) [Serratia fonticola strain NEB369]
MSLAVIYTRATIGVQAPSVMVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADKLAHYEFLGELALSGALRAVHGAIPAAIAAAEAKRELILAAANGKEAGLLPNSTTRVAEHL
LEVCAFLQGKGDLPIAVAPPAAAASTETADLQEVIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLNGLLPPLSD
REALESVAVASLLHHPDETLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRASAKVHFPARVQLIAAMNPSPTGHYQGIHNRTPPQQILRYLGRLSGPFLDRFDLSIEVPLLPPGVLARQHHA
GESSQQVRQRVLVAREQQLARAGKVNALLSNREVDRDCHLPATEAEFLEKTLSQLGLSVRAWHRILKVARTLADLAGEQQ
IDKRHLSEALSYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=875154 RFB13_RS26120 WP_309205566.1 5673646..5675169(+) (comM) [Serratia fonticola strain NEB369]
ATGTCACTGGCGGTAATCTATACCCGTGCCACGATCGGCGTGCAGGCGCCTTCGGTCATGGTTGAAGTCCATATCAGCAA
CGGATTACCCGGCCTTACCCTGGTCGGCCTGCCGGAAACCACGGTGAAAGAAGCCCGTGACCGGGTGCGCAGCGCATTGA
TCAACAACGGTTTCACCTTTCCGGCCAAACGCATCACCGTCAATCTGGCACCGGCCGATTTGCCTAAGGAAGGGGGGCGC
TATGATTTACCCATTGCGCTGGCCATTCTGGCGGCCTCAGAGCAGCTGCCAGCAGATAAGTTGGCGCACTATGAGTTCCT
GGGTGAATTAGCGCTTTCTGGCGCATTGAGGGCGGTGCACGGCGCCATTCCGGCGGCAATAGCGGCAGCCGAGGCCAAGC
GGGAGTTGATCCTGGCTGCGGCCAACGGCAAAGAGGCGGGGTTGCTTCCCAACAGCACGACCCGAGTCGCAGAACATTTA
CTGGAGGTGTGCGCTTTTTTGCAGGGTAAGGGGGATCTGCCGATCGCCGTAGCGCCTCCTGCGGCTGCCGCGTCAACGGA
AACTGCCGACTTGCAGGAAGTCATTGGCCAGGAACAGGCAAAGCGAGCGTTGGAAATTGCCGCGGCCGGGGGCCACAACC
TGTTGCTGCTTGGCCCTCCGGGCACCGGCAAAACCATGCTGGCCAGCCGCCTCAATGGCTTGCTGCCGCCGTTAAGCGAT
CGGGAGGCGCTGGAAAGCGTCGCCGTTGCCAGCCTACTGCATCATCCAGATGAAACCCTGCCATGGCGCCAGCGGCCGTT
TCGCGCCCCACACCACAGCGCCTCGATGGCTGCCCTGGTTGGGGGAGGTTCCTTGCCACGGCCAGGGGAAATCTCCATGG
CGCACAACGGCGTACTGTTTCTGGATGAATTACCCGAATTTGAACGGCGAGTATTAGATGCGCTGCGTGAGCCTCTGGAA
TCCGGTGAAATCGTCATCTCACGCGCCAGCGCCAAGGTACACTTCCCTGCCCGAGTGCAGCTGATTGCGGCGATGAACCC
CAGCCCAACCGGGCACTATCAGGGCATACACAACCGCACGCCACCGCAGCAGATTTTGCGCTACCTCGGCAGGCTCTCTG
GCCCCTTCCTCGATCGATTTGATTTGTCGATTGAGGTGCCGCTGCTGCCACCGGGCGTACTGGCCAGGCAGCACCATGCG
GGGGAAAGCAGCCAACAGGTACGTCAACGGGTGCTGGTGGCGCGCGAACAGCAGCTGGCACGGGCAGGTAAAGTGAATGC
GCTGTTGAGTAACCGCGAGGTGGATCGGGATTGCCATTTGCCTGCAACTGAAGCGGAGTTTTTAGAGAAAACGCTGAGCC
AACTGGGATTATCGGTTCGAGCCTGGCATCGCATCCTGAAAGTGGCACGCACGCTGGCCGATTTGGCAGGGGAACAACAG
ATTGATAAACGCCATCTCAGCGAAGCGCTCAGCTATCGCAGTATGGATCGCCTGCTGCTGCAGCTACACCGCAGCCTGGA
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.403

99.803

0.663
  comM Vibrio cholerae strain A1552

65.936

99.014

0.653
  comM Glaesserella parasuis strain SC1401

65.089

100

0.651
  comM Vibrio campbellii strain DS40M4

64.741

99.014

0.641
  comM Legionella pneumophila str. Paris

50.202

97.83

0.491
  comM Legionella pneumophila strain ERS1305867

50.202

97.83

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.597

100

0.46