Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RB215_RS00660 Genome accession   NZ_CP133571
Coordinates   138426..139937 (+) Length   503 a.a.
NCBI ID   WP_182684127.1    Uniprot ID   A0AA51S7C0
Organism   Pseudoalteromonas sp. HL-AS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 133426..144937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB215_RS00620 (RB215_00620) - 133490..134113 (+) 624 WP_086994344.1 dUTP diphosphatase -
  RB215_RS00625 (RB215_00625) yrfG 134129..134776 (-) 648 WP_011326848.1 GMP/IMP nucleotidase -
  RB215_RS00630 (RB215_00630) nudE 134839..135411 (+) 573 WP_309217147.1 ADP compounds hydrolase NudE -
  RB215_RS00635 (RB215_00635) cysQ 135404..136189 (+) 786 WP_011326850.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  RB215_RS00655 (RB215_00655) - 137778..138392 (+) 615 WP_011326851.1 trimeric intracellular cation channel family protein -
  RB215_RS00660 (RB215_00660) comM 138426..139937 (+) 1512 WP_182684127.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RB215_RS00665 (RB215_00665) - 139934..140653 (-) 720 WP_011326853.1 response regulator transcription factor -
  RB215_RS00670 (RB215_00670) - 140883..143384 (-) 2502 WP_309216673.1 prolyl oligopeptidase family serine peptidase -
  RB215_RS00675 (RB215_00675) - 143469..144545 (+) 1077 WP_011326855.1 hemolysin family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55132.31 Da        Isoelectric Point: 7.6928

>NTDB_id=874979 RB215_RS00660 WP_182684127.1 138426..139937(+) (comM) [Pseudoalteromonas sp. HL-AS2]
MSLARIYSRAQVGINAPEVIVEVHLGNGLPAFHIVGLPEASVKESKDRVRSALENSKFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQIVCSDIHKYEFYGELALNGEIRGVNAILPSVLAAKEQDRCCFLPLANDSLASLVNGVKRKAVSSI
AEVWGDLLNQQPLPLNIQYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMATIMPTMS
DDEAIATAALYSIIGQSIDLTNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGTVTISRAARQMEFPAQFQLITALNPSPTGCHNDKRATPDQVMRYLSRVSGPFIDRIDLQIELPRLTSVELQSSKPEE
TSAVVRARVEAAYYLQLKRQGKVNARLNNKEMSIHCDLASTELQFLARASEKLALSPRSYHRIIKVARTISDLKGAERIS
LDELKEALNYRAFERLLAQLTKY

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=874979 RB215_RS00660 WP_182684127.1 138426..139937(+) (comM) [Pseudoalteromonas sp. HL-AS2]
ATGTCGTTAGCTCGCATATATTCTCGTGCTCAGGTGGGCATAAATGCCCCCGAAGTGATTGTTGAGGTGCATTTAGGTAA
TGGTTTGCCTGCTTTTCATATTGTCGGTTTGCCCGAGGCTTCGGTTAAAGAATCTAAAGACAGAGTGCGTAGCGCACTTG
AAAATTCTAAGTTTGGTTTTCCCGATCAACGTATTACTGTTAATTTAGCCCCTGCCGATTTACCAAAAGACGGTGGCCGA
TTCGATCTTGCTATTGCCGTAGGTATTTTAGTCGCCTCAGGGCAAATAGTGTGCTCTGACATTCATAAATATGAGTTTTA
TGGGGAGCTGGCACTTAACGGTGAGATACGTGGCGTAAATGCTATTTTGCCCTCGGTGCTTGCTGCTAAAGAGCAGGACC
GTTGCTGTTTTTTACCACTGGCAAATGATAGCTTAGCCAGTTTAGTTAACGGGGTTAAACGCAAAGCCGTAAGCTCTATT
GCAGAAGTGTGGGGCGATTTACTTAATCAGCAACCACTGCCGTTAAATATACAATACCCAGATTGTACGCAAGCTCCTGA
TTTTTTGCTTGATTTAAGTGATGTGAAAGGCCAGCCTGGGGCAAAGCGAGTACTCGAAATTGCCGCTGCAGGAGGCCATA
ACTTACTATTTTTAGGACCCCCTGGTACGGGTAAGTCAATGCTGGCTCAACGTATGGCAACCATTATGCCAACCATGTCA
GATGATGAAGCAATTGCTACTGCGGCGCTTTATTCTATTATTGGCCAGTCGATTGATTTAACTAATTGGCGACAACGGCC
ATTTCGCAATCCTCACCATACCTGCTCTGCCGTTGCATTAGTCGGTGGCTCGTCAAACCCTAAACCGGGTGAAATTTCAT
TGGCGCATAATGGCGTGCTTTTTTTAGATGAGTTGCCAGAGTTCGAACGTAAAGTGCTCGATTCGCTGCGTGAACCTATG
GAAACTGGTACGGTCACTATTTCGCGTGCGGCAAGGCAAATGGAGTTTCCGGCGCAGTTTCAGCTTATTACGGCGCTAAA
CCCCAGCCCTACAGGTTGCCATAATGATAAGCGGGCAACGCCTGATCAAGTAATGCGTTATTTGTCGCGTGTTTCGGGGC
CGTTTATTGACCGTATTGACTTACAAATTGAATTACCAAGGCTAACGAGTGTTGAGTTACAAAGTAGCAAACCCGAAGAA
ACCAGTGCAGTAGTAAGAGCGCGAGTAGAGGCTGCTTATTATTTGCAGCTAAAACGCCAAGGTAAAGTGAATGCGCGGTT
AAACAATAAAGAAATGAGTATACATTGTGATCTCGCTTCCACTGAGTTGCAGTTTTTAGCCAGAGCGAGTGAAAAACTGG
CATTATCGCCACGCTCATACCATAGAATAATTAAAGTCGCGCGTACTATTAGTGATTTAAAAGGGGCGGAGCGTATTAGC
TTAGATGAGCTAAAAGAAGCACTTAACTACCGCGCCTTTGAGCGCTTACTAGCGCAATTAACTAAGTACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.151

100

0.563
  comM Glaesserella parasuis strain SC1401

54.331

100

0.549
  comM Vibrio campbellii strain DS40M4

54.762

100

0.549
  comM Haemophilus influenzae Rd KW20

53.922

100

0.547
  comM Legionella pneumophila str. Paris

49.605

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.605

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.095

100

0.423