Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RB214_RS15580 Genome accession   NZ_CP133569
Coordinates   3353745..3355256 (-) Length   503 a.a.
NCBI ID   WP_309167751.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. HL-AS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3348745..3360256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB214_RS15565 (RB214_15565) - 3349171..3350247 (-) 1077 WP_309167749.1 hemolysin family protein -
  RB214_RS15570 (RB214_15570) - 3350332..3352827 (+) 2496 WP_309167750.1 prolyl oligopeptidase family serine peptidase -
  RB214_RS15575 (RB214_15575) - 3353044..3353748 (+) 705 WP_024605629.1 response regulator transcription factor -
  RB214_RS15580 (RB214_15580) comM 3353745..3355256 (-) 1512 WP_309167751.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RB214_RS15585 (RB214_15585) - 3355291..3355905 (-) 615 WP_002957915.1 trimeric intracellular cation channel family protein -
  RB214_RS15605 (RB214_15605) cysQ 3356651..3357454 (-) 804 WP_002963016.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  RB214_RS15610 (RB214_15610) nudE 3357447..3358019 (-) 573 WP_309167752.1 ADP compounds hydrolase NudE -
  RB214_RS15615 (RB214_15615) yrfG 3358081..3358728 (+) 648 WP_309167753.1 GMP/IMP nucleotidase -
  RB214_RS15620 (RB214_15620) - 3358744..3359367 (-) 624 WP_002963012.1 dUTP diphosphatase -
  RB214_RS15625 (RB214_15625) - 3359448..3359816 (-) 369 WP_002963010.1 YacL family protein -
  RB214_RS15630 (RB214_15630) - 3359933..3360157 (-) 225 WP_002963009.1 hypothetical protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55112.13 Da        Isoelectric Point: 7.0052

>NTDB_id=874974 RB214_RS15580 WP_309167751.1 3353745..3355256(-) (comM) [Pseudoalteromonas sp. HL-AS1]
MSLARIFSRAQVGINAPEVIVEVHLGNGLPAFHIVGLPEASVKESKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGVLVASGQIVCPDIHKYEFYGELALNGEVRGVNAILPSVLAAKEQDRCCFLPLANDSLASLVNGVKRKAVSSI
QEVWGDLLNQQPLPLNIEYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMATIMPTMS
DDEAISTAALYSIIGQSIDLTNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGTVTISRAARQMEFPAQFQLITALNPSPTGSHTDKRATPDQVMRYLSRVSGPFIDRIDLQIELPRLTSVELQSTQPEE
SSAEVRARVETAYYLQLKRQGKVNARLNNKEMSVHCVLAPAELQFLARASEKLSLSPRSYHRVIKVARTISDLKGAENIS
LNELKEALNYRAFERLIAQLTKY

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=874974 RB214_RS15580 WP_309167751.1 3353745..3355256(-) (comM) [Pseudoalteromonas sp. HL-AS1]
ATGTCGTTAGCTCGTATATTTTCTCGTGCTCAAGTGGGCATAAATGCCCCTGAAGTTATTGTAGAAGTTCACCTAGGAAA
TGGTTTACCTGCTTTTCATATTGTAGGTCTGCCCGAAGCGTCTGTTAAAGAGTCGAAAGACAGGGTGCGTAGCGCACTCG
AAAACTCACAATTTGGTTTCCCCGATCAACGAATAACCGTAAATTTAGCCCCAGCCGACTTACCAAAAGATGGAGGGCGG
TTTGATCTGGCTATTGCGGTGGGAGTTTTAGTCGCCTCTGGGCAAATAGTGTGTCCTGATATTCATAAGTACGAGTTTTA
TGGTGAGCTCGCTCTTAATGGTGAAGTGCGTGGTGTAAACGCTATTTTACCTTCGGTACTTGCTGCAAAAGAGCAAGATC
GTTGCTGCTTTTTACCTCTTGCAAACGACAGCCTAGCAAGCTTAGTTAATGGCGTTAAACGCAAAGCCGTAAGCTCTATT
CAAGAAGTATGGGGCGACCTACTTAATCAACAACCCTTGCCATTAAATATAGAGTATCCCGACTGCACACAAGCCCCTGA
CTTTTTACTTGATTTAAGCGATGTGAAAGGTCAGCCCGGTGCAAAGCGAGTACTCGAAATTGCTGCAGCTGGCGGGCATA
ATTTATTATTTTTAGGTCCTCCAGGTACTGGTAAATCGATGCTGGCCCAGCGAATGGCAACTATAATGCCTACTATGTCG
GACGATGAAGCTATTTCGACAGCTGCGCTTTACTCTATTATTGGGCAATCCATAGATTTAACTAATTGGCGACAGCGGCC
ATTTCGTAATCCACATCATACGTGCTCAGCTGTTGCTTTGGTGGGGGGCTCTTCAAATCCCAAGCCTGGTGAAATTTCTC
TGGCACACAATGGCGTACTTTTTTTGGATGAATTGCCTGAGTTCGAACGCAAGGTACTTGATTCACTGCGTGAGCCAATG
GAAACCGGTACGGTTACTATTTCACGTGCAGCTAGGCAAATGGAGTTTCCGGCGCAGTTTCAGCTTATTACAGCATTAAA
TCCAAGCCCAACAGGGAGTCATACAGATAAGCGGGCAACTCCCGATCAAGTTATGCGTTATTTATCGCGCGTGTCGGGGC
CTTTTATTGATCGTATTGATTTGCAAATAGAACTACCTCGTTTAACTAGTGTTGAACTACAAAGTACTCAGCCGGAGGAA
AGTAGTGCTGAGGTTAGAGCAAGAGTTGAAACGGCTTATTACCTACAACTAAAACGTCAAGGTAAGGTTAATGCGAGGCT
TAATAATAAAGAAATGAGTGTGCACTGTGTACTAGCGCCAGCAGAGTTGCAGTTTTTAGCCAGAGCAAGCGAAAAGTTGT
CTTTATCGCCACGCTCTTATCATAGAGTAATTAAGGTGGCGCGAACTATTAGTGATTTAAAGGGGGCTGAAAATATTAGT
TTAAATGAGCTTAAGGAAGCTCTTAATTACCGTGCATTTGAGCGCCTTATTGCGCAATTAACTAAATATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.754

100

0.559
  comM Vibrio campbellii strain DS40M4

53.77

100

0.539
  comM Haemophilus influenzae Rd KW20

53.346

100

0.539
  comM Glaesserella parasuis strain SC1401

53.36

100

0.537
  comM Legionella pneumophila str. Paris

50.1

99.602

0.499
  comM Legionella pneumophila strain ERS1305867

50.1

99.602

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.095

100

0.423