Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RDV84_RS05430 Genome accession   NZ_CP133568
Coordinates   1270770..1272296 (+) Length   508 a.a.
NCBI ID   WP_309152707.1    Uniprot ID   -
Organism   Lysobacter yananisis strain SNNU513     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1265770..1277296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV84_RS05405 (RDV84_05405) - 1267256..1268239 (-) 984 WP_309153694.1 YeiH family protein -
  RDV84_RS05410 (RDV84_05410) - 1268421..1269332 (+) 912 WP_309152705.1 LysR family transcriptional regulator -
  RDV84_RS05415 (RDV84_05415) - 1269386..1269649 (-) 264 WP_309152706.1 hypothetical protein -
  RDV84_RS05420 (RDV84_05420) - 1269810..1270148 (-) 339 WP_057945893.1 P-II family nitrogen regulator -
  RDV84_RS05425 (RDV84_05425) - 1270481..1270759 (+) 279 WP_057945892.1 accessory factor UbiK family protein -
  RDV84_RS05430 (RDV84_05430) comM 1270770..1272296 (+) 1527 WP_309152707.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RDV84_RS05435 (RDV84_05435) - 1272635..1273465 (+) 831 WP_057945890.1 AraC family transcriptional regulator -
  RDV84_RS05440 (RDV84_05440) - 1273934..1274089 (+) 156 WP_168356157.1 hypothetical protein -
  RDV84_RS05445 (RDV84_05445) - 1274095..1274976 (+) 882 WP_309152708.1 alpha/beta hydrolase -
  RDV84_RS05450 (RDV84_05450) - 1275110..1276120 (+) 1011 WP_078997298.1 alpha/beta fold hydrolase -
  RDV84_RS05455 (RDV84_05455) - 1276166..1277236 (-) 1071 WP_309152709.1 nitronate monooxygenase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54010.69 Da        Isoelectric Point: 8.5842

>NTDB_id=874943 RDV84_RS05430 WP_309152707.1 1270770..1272296(+) (comM) [Lysobacter yananisis strain SNNU513]
MNLALVHSRARTGVRAPAVRVEVHLGGGLPCMNIVGLPEAAVREAKDRVRAAIASAQYEFPQRRITVNLAPADLPKDGGR
YDLAIALGILAASGQLPLPALADCEFLGELGLTGELRAIDGVLPAALAAAEAGRRLVVPAGNGAEAALASRVEARTARTL
SEVCAMLCERASLPRAVAPPLARAPELDMRDVRGQAQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEASEDE
ALETAAIASVGGGGHGRALDPSRWRQRPFRAPHHTASAVALVGGGADPRPGEISLAHQGVLFLDELPEWERRALEVLREP
LESGAVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDSSARCRCTEDLIRRYRARISGPLLDRIDLHIEVPRLPPAALRP
DQPEGECSAAIRERVTAARQRQAERSGRTNSRLDQAQTNQHCRLGERDQALLERAVDGLQLSARSMHRILRVARTIADLA
DSANIGTAHLTEAIGYRRADRDSAARAS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=874943 RDV84_RS05430 WP_309152707.1 1270770..1272296(+) (comM) [Lysobacter yananisis strain SNNU513]
ATGAACCTGGCGCTCGTGCACAGCCGTGCGCGAACGGGGGTGCGTGCGCCGGCGGTACGCGTCGAAGTGCATCTGGGCGG
CGGCCTGCCGTGCATGAACATCGTCGGCCTGCCCGAGGCCGCGGTGCGCGAGGCCAAGGACCGGGTGCGCGCGGCGATCG
CCTCGGCGCAGTACGAATTCCCGCAACGACGCATCACCGTCAACCTCGCGCCGGCCGATCTGCCCAAGGACGGCGGCCGC
TACGACCTCGCCATCGCGCTCGGCATCCTCGCCGCGAGCGGACAGCTGCCGCTGCCGGCGCTCGCCGATTGCGAGTTCCT
CGGCGAGCTCGGCCTCACCGGCGAGCTGCGCGCGATCGACGGCGTGCTGCCGGCGGCGCTGGCCGCGGCCGAGGCCGGCC
GGCGGCTGGTGGTGCCGGCCGGCAACGGCGCCGAAGCGGCTCTGGCCAGCCGGGTCGAGGCGCGCACCGCGCGCACGCTG
TCGGAGGTCTGCGCGATGCTGTGCGAACGCGCGTCGCTGCCGCGCGCCGTGGCCCCGCCGCTGGCGCGCGCGCCGGAACT
GGACATGCGCGACGTGCGCGGCCAGGCCCAGGCGCGACGCGCGCTGGAGATCGCCGCGGCCGGCGGCCACCATTTGTTGC
TGATCGGCCCGCCCGGCTGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCCTGCTGCCCGAGGCCAGCGAAGACGAA
GCGCTGGAAACCGCGGCGATCGCCTCGGTCGGCGGCGGCGGCCACGGCCGCGCGCTGGACCCGTCGCGCTGGCGCCAGCG
CCCGTTCCGCGCCCCGCACCACACCGCCAGCGCGGTCGCGCTGGTCGGCGGCGGCGCCGATCCGCGGCCCGGCGAGATAT
CGCTGGCGCACCAAGGCGTGCTGTTCCTCGATGAGCTGCCCGAATGGGAGCGGCGCGCGCTGGAAGTGCTGCGCGAGCCG
CTGGAGTCGGGCGCGGTCACGGTGTCGCGCGCGGCGCGCAGCGCCGAGTTTCCGGCGCGCTTCCAGTTGGTCGCGGCGAT
GAATCCCTGCCCCTGCGGCTGGGCCGGCGACAGCAGCGCGCGCTGCCGCTGCACCGAAGACCTCATCCGCCGCTACCGCG
CGCGCATCTCCGGCCCGCTGCTGGACCGCATCGACCTGCACATCGAAGTGCCGCGGCTGCCGCCGGCGGCGCTGCGCCCC
GACCAGCCCGAGGGCGAATGCAGCGCGGCGATCCGCGAGCGCGTGACCGCCGCGCGGCAGCGCCAGGCCGAGCGCAGCGG
CCGGACCAATTCGCGCCTCGACCAGGCCCAGACCAACCAGCATTGCCGCCTGGGCGAACGCGACCAGGCGCTGCTGGAAC
GGGCGGTCGACGGCCTGCAGCTGTCGGCGCGCTCGATGCACCGGATCTTGCGGGTCGCGCGCACCATCGCCGATCTGGCC
GACAGCGCCAACATCGGCACCGCGCATTTGACCGAAGCCATCGGTTATCGGCGCGCGGATCGCGACAGCGCCGCGCGAGC
GTCCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.274

99.016

0.537
  comM Vibrio campbellii strain DS40M4

52.883

99.016

0.524
  comM Glaesserella parasuis strain SC1401

52.165

100

0.522
  comM Haemophilus influenzae Rd KW20

52.286

99.016

0.518
  comM Legionella pneumophila str. Paris

51.697

98.622

0.51
  comM Legionella pneumophila strain ERS1305867

51.697

98.622

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.205

100

0.455