Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Q0W94_RS07620 Genome accession   NZ_AP024678
Coordinates   1548244..1548606 (-) Length   120 a.a.
NCBI ID   WP_297757382.1    Uniprot ID   A0A915V5A3
Organism   MAG: Thermosynechococcus sp. isolate KatS3mg067     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1543244..1553606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0W94_RS07595 (KatS3mg067_1488) - 1543609..1544364 (+) 756 WP_297757368.1 MBL fold metallo-hydrolase -
  Q0W94_RS07600 (KatS3mg067_1489) - 1544367..1544858 (+) 492 WP_297757371.1 phosphate-starvation-inducible PsiE family protein -
  Q0W94_RS07605 (KatS3mg067_1490) - 1544835..1545695 (-) 861 WP_315863112.1 prephenate/arogenate dehydrogenase -
  Q0W94_RS07610 (KatS3mg067_1491) - 1545850..1546977 (+) 1128 WP_297757377.1 HhoA/HhoB/HtrA family serine endopeptidase -
  Q0W94_RS07615 (KatS3mg067_1492) - 1546979..1548241 (+) 1263 WP_297757379.1 phospholipid carrier-dependent glycosyltransferase -
  Q0W94_RS07620 (KatS3mg067_1493) pilH 1548244..1548606 (-) 363 WP_297757382.1 response regulator transcription factor Machinery gene
  Q0W94_RS07625 (KatS3mg067_1494) - 1548733..1549572 (-) 840 WP_297757384.1 energy-coupling factor ABC transporter ATP-binding protein -
  Q0W94_RS07630 (KatS3mg067_1495) cbiQ 1549574..1550365 (-) 792 WP_297757389.1 cobalt ECF transporter T component CbiQ -
  Q0W94_RS07635 (KatS3mg067_1496) - 1550366..1550668 (-) 303 WP_297757392.1 energy-coupling factor ABC transporter substrate-binding protein -
  Q0W94_RS07640 (KatS3mg067_1497) - 1550778..1551551 (-) 774 WP_297757395.1 energy-coupling factor ABC transporter permease -
  Q0W94_RS07645 (KatS3mg067_1498) - 1551796..1552101 (+) 306 WP_297757397.1 cell division protein SepF -
  Q0W94_RS07650 (KatS3mg067_1499) - 1552114..1552500 (+) 387 WP_297757400.1 hypothetical protein -
  Q0W94_RS07655 (KatS3mg067_1500) recF 1552439..1553578 (-) 1140 WP_297757402.1 DNA replication/repair protein RecF -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13373.63 Da        Isoelectric Point: 4.4708

>NTDB_id=87490 Q0W94_RS07620 WP_297757382.1 1548244..1548606(-) (pilH) [MAG: Thermosynechococcus sp. isolate KatS3mg067]
MATIMVVDDSPTLRAMIVELMKAQSYDVVEAEDGIEAQEKIKAQCPDLVILDVVMPRMNGYELCRWIKGEAASQKVPVIM
CTTKSEEFDIHWGKKQGVDAYITKPFDPAELVATVKQLLG

Nucleotide


Download         Length: 363 bp        

>NTDB_id=87490 Q0W94_RS07620 WP_297757382.1 1548244..1548606(-) (pilH) [MAG: Thermosynechococcus sp. isolate KatS3mg067]
ATGGCCACAATTATGGTTGTTGATGACAGTCCCACCCTGCGGGCAATGATTGTTGAGCTGATGAAGGCGCAGAGCTACGA
TGTTGTGGAAGCAGAGGATGGCATCGAAGCTCAGGAAAAAATTAAAGCTCAATGTCCCGACTTAGTGATTCTCGATGTGG
TGATGCCGCGCATGAATGGTTACGAACTCTGCCGCTGGATTAAGGGAGAAGCGGCTTCCCAAAAGGTGCCAGTGATTATG
TGTACTACCAAAAGTGAAGAATTTGATATTCACTGGGGCAAAAAACAGGGTGTAGATGCCTACATCACTAAGCCCTTTGA
TCCTGCAGAACTGGTTGCCACCGTCAAACAGCTCTTGGGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

55.462

99.167

0.55
  micA Streptococcus pneumoniae Cp1015

39.496

99.167

0.392
  pilG Acinetobacter baumannii strain A118

40.351

95

0.383
  chpA Acinetobacter baumannii strain A118

39.655

96.667

0.383
  vicR Streptococcus mutans UA159

37.815

99.167

0.375

Multiple sequence alignment