Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q9312_RS12095 Genome accession   NZ_CP133548
Coordinates   2689859..2691373 (-) Length   504 a.a.
NCBI ID   WP_309201111.1    Uniprot ID   A0AA51X5M5
Organism   Pleionea litopenaei strain HL-JVS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2684859..2696373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9312_RS12080 (Q9312_12080) - 2686331..2687203 (+) 873 WP_309201108.1 retroviral-like aspartic protease family protein -
  Q9312_RS12085 (Q9312_12085) rep 2687209..2689230 (-) 2022 WP_309201109.1 DNA helicase Rep -
  Q9312_RS12090 (Q9312_12090) - 2689399..2689608 (-) 210 WP_309201110.1 hypothetical protein -
  Q9312_RS12095 (Q9312_12095) comM 2689859..2691373 (-) 1515 WP_309201111.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q9312_RS12100 (Q9312_12100) - 2691506..2691898 (-) 393 WP_309201112.1 DUF3192 domain-containing protein -
  Q9312_RS12105 (Q9312_12105) aroE 2692060..2692854 (+) 795 WP_309201113.1 shikimate dehydrogenase -
  Q9312_RS12110 (Q9312_12110) - 2692878..2694038 (-) 1161 WP_309201114.1 methyl-accepting chemotaxis protein -
  Q9312_RS12115 (Q9312_12115) - 2694116..2694649 (-) 534 WP_309201115.1 gamma carbonic anhydrase family protein -
  Q9312_RS12120 (Q9312_12120) gorA 2694717..2696066 (-) 1350 WP_309201116.1 glutathione-disulfide reductase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 55373.53 Da        Isoelectric Point: 7.5453

>NTDB_id=874810 Q9312_RS12095 WP_309201111.1 2689859..2691373(-) (comM) [Pleionea litopenaei strain HL-JVS1]
MNLSHIFSRAGVGIEAPQVTIETHISNGLPALSIVGLPEAAVRESKDRVRSALINSNFEFPTRRITINLAPADLPKDGCR
FDLPIALGILAASGQLPVQHLANYEFIGELALSGELRPIHGILPAALAAKRSQRILVLPEQNAPEASLVDAEQLIAQQLL
DVVAHLVGQKRLDLNHPIQSEQSTEKTPDLIDVKGQYAAKRALEIAAAGKHNLLFIGPPGTGKTMLASRLSGLMPELSDE
EAVDCAAIASVSGRRRLTKQWKVRPFRVPHHTASAVALIGGGSNPRPGEVSLAHNGVLFLDELPEFDRKVLEVLREPLES
GSVTISRAARQAEYPARFQLIAAMNPCPCGHFGNARGQCRCSPDQIRRYLLKLSGPFLDRIDLHIDVPLMTRKEFTAPVD
SASESTAEVRSRVEQAHAVQYQRQYKLNGDLQASELDQQLAIEPAAREFVLQVMEKLGLSARAYHRILRVSRTIADLEGC
EQVDRQHVSEAISYRKFERMMQQI

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=874810 Q9312_RS12095 WP_309201111.1 2689859..2691373(-) (comM) [Pleionea litopenaei strain HL-JVS1]
ATGAACCTCTCTCATATATTTTCGCGCGCCGGTGTCGGCATTGAAGCGCCGCAAGTGACCATTGAAACCCATATCTCAAA
TGGTTTGCCAGCACTCAGCATCGTTGGCTTACCAGAAGCGGCTGTGCGTGAGAGTAAAGATCGTGTGCGCAGTGCACTGA
TTAACTCAAACTTTGAATTTCCTACGCGGCGCATCACGATCAATCTAGCACCAGCGGACTTACCCAAAGATGGCTGCCGT
TTTGACTTACCGATTGCGTTGGGTATTTTAGCGGCGAGTGGCCAGCTTCCCGTGCAGCACTTGGCCAACTATGAGTTTAT
TGGTGAGTTAGCGTTATCTGGAGAGCTACGGCCTATTCACGGCATATTACCAGCAGCGCTTGCAGCAAAGCGATCGCAAA
GAATTTTAGTGTTGCCAGAGCAAAATGCGCCGGAGGCATCGTTAGTTGATGCTGAGCAACTCATTGCTCAGCAACTGCTC
GATGTTGTTGCCCACTTAGTGGGACAAAAGCGATTAGATTTAAATCACCCGATTCAATCGGAACAAAGTACTGAGAAGAC
GCCTGACCTTATTGATGTCAAAGGACAATATGCAGCGAAGCGAGCTTTAGAAATTGCCGCCGCCGGTAAGCACAACTTAT
TGTTTATTGGCCCTCCTGGAACTGGAAAAACCATGTTGGCAAGTCGGTTATCGGGATTGATGCCCGAATTGTCTGATGAA
GAGGCTGTAGACTGTGCTGCGATAGCATCGGTCAGTGGGCGACGACGATTAACTAAGCAATGGAAAGTTCGGCCGTTTCG
AGTACCGCATCATACGGCATCGGCCGTTGCTTTGATTGGTGGTGGTAGTAACCCAAGGCCAGGCGAAGTGTCATTGGCGC
ACAATGGCGTCTTGTTCCTCGATGAGCTCCCCGAATTTGATCGTAAAGTGCTGGAGGTCCTTAGAGAACCGCTTGAATCA
GGCTCCGTCACTATTTCTCGAGCGGCACGCCAAGCCGAATACCCAGCCCGCTTCCAGTTAATCGCTGCGATGAACCCATG
CCCTTGTGGGCATTTTGGAAACGCTCGTGGGCAATGTCGCTGTTCACCGGATCAAATACGACGCTATTTGCTTAAGTTGT
CCGGTCCGTTTCTCGACCGCATTGACTTGCACATAGACGTGCCTTTAATGACGCGCAAAGAGTTTACTGCGCCAGTGGAT
AGCGCATCGGAATCAACCGCTGAAGTGCGCTCTCGTGTTGAACAGGCGCATGCGGTGCAATACCAAAGGCAGTACAAGCT
GAATGGCGACTTGCAGGCATCGGAGTTAGATCAACAGCTTGCGATTGAGCCGGCAGCTCGTGAATTTGTATTGCAGGTGA
TGGAAAAACTGGGACTGTCTGCTCGAGCCTATCACCGTATTTTGCGTGTTTCTCGAACCATTGCTGATTTAGAAGGCTGT
GAGCAGGTTGACCGACAACACGTTTCTGAAGCGATTAGTTATCGAAAGTTTGAGCGTATGATGCAGCAAATTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.04

100

0.562
  comM Vibrio campbellii strain DS40M4

55.336

100

0.556
  comM Haemophilus influenzae Rd KW20

54.813

100

0.554
  comM Glaesserella parasuis strain SC1401

54.224

100

0.548
  comM Legionella pneumophila str. Paris

51.383

100

0.516
  comM Legionella pneumophila strain ERS1305867

51.383

100

0.516
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.738

100

0.45