Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RDI66_RS09420 Genome accession   NZ_CP133492
Coordinates   1997804..1999333 (-) Length   509 a.a.
NCBI ID   WP_309042808.1    Uniprot ID   -
Organism   Pasteurella multocida strain PM140     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1992804..2004333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDI66_RS09395 (RDI66_09395) - 1994101..1994784 (-) 684 WP_005718066.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  RDI66_RS09400 (RDI66_09400) envC 1994967..1996196 (+) 1230 WP_170352211.1 murein hydrolase activator EnvC -
  RDI66_RS09405 (RDI66_09405) - 1996193..1997035 (+) 843 WP_015690948.1 divergent polysaccharide deacetylase family protein -
  RDI66_RS09410 (RDI66_09410) - 1997056..1997499 (+) 444 WP_240963998.1 hypothetical protein -
  RDI66_RS09415 (RDI66_09415) - 1997502..1997738 (+) 237 WP_240963997.1 hypothetical protein -
  RDI66_RS09420 (RDI66_09420) comM 1997804..1999333 (-) 1530 WP_309042808.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RDI66_RS09425 (RDI66_09425) yihA 1999441..2000058 (-) 618 WP_005718080.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RDI66_RS09430 (RDI66_09430) - 2000169..2001038 (+) 870 WP_015690951.1 VirK/YbjX family protein -
  RDI66_RS09435 (RDI66_09435) trmL 2001113..2001589 (-) 477 WP_005757697.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  RDI66_RS09440 (RDI66_09440) - 2001747..2002073 (+) 327 WP_015690952.1 type II toxin-antitoxin system RelE/ParE family toxin -
  RDI66_RS09445 (RDI66_09445) - 2002167..2002493 (+) 327 WP_015690953.1 HigA family addiction module antitoxin -
  RDI66_RS09450 (RDI66_09450) - 2002547..2004067 (-) 1521 WP_015690954.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55945.38 Da        Isoelectric Point: 9.8015

>NTDB_id=874787 RDI66_RS09420 WP_309042808.1 1997804..1999333(-) (comM) [Pasteurella multocida strain PM140]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPANLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSQQDTYFAQHL
LEVVNFLNDHTTLPLASDLPTQHDPAPLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLIHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=874787 RDI66_RS09420 WP_309042808.1 1997804..1999333(-) (comM) [Pasteurella multocida strain PM140]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCTCAATTTAAATACCCTGCTAAACGGATCACGGTCAATCTCGCCCCCGCCAATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGATCCACAAAAGTTACAACAATTTGAATTTGT
GGGTGAGTTAGCGCTAACCGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTTCCCAGCAAGACACCTATTTTGCGCAACATTTA
TTAGAAGTCGTCAATTTCCTCAATGATCATACCACGTTACCTTTAGCCTCAGACCTGCCTACACAACATGATCCAGCCCC
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCCTTAACTATTGCTGCCGCAG
GACAACATAATCTGCTTTTTTTGGGTCCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTATTCATCATGAATTGAATTTTCATAATTGGAA
ACAACGCCCATTTCGTGCCCCTCATCACAGCGCTTCAACACCAGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGTG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTCGATGAGTTACCAGAATTTGAACGTAAAGTATTAGATGCCTTACGT
CAACCTTTGGAAAGTGGTGAAATTATAATTTCGCGTGCCAATGCAAAAATTCAATTCCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACGGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTGCGTTATCTCA
ATCGCTTATCCGGTCCGTTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTACCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACAAGTGAGAGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGTGCGGG
AAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAAA
ATGCCTTAGCTAAATTGGGGTTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGCCAAATTCAACAATGCCACCTCGCCGAAGCACTGGGTTATCGGGCGATGGATAGGCTGTTACAGAAGTTATC
TGCGATGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.086

100

0.841
  comM Glaesserella parasuis strain SC1401

77.515

99.607

0.772
  comM Vibrio cholerae strain A1552

65.748

99.804

0.656
  comM Vibrio campbellii strain DS40M4

65.551

99.804

0.654
  comM Legionella pneumophila str. Paris

51.8

98.232

0.509
  comM Legionella pneumophila strain ERS1305867

51.8

98.232

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.333

100

0.468