Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   RDV54_RS07210 Genome accession   NZ_CP133471
Coordinates   1515531..1515764 (+) Length   77 a.a.
NCBI ID   WP_000941923.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1510531..1520764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS07210 (RDV54_07210) comW 1515531..1515764 (+) 234 WP_000941923.1 sigma(X)-activator ComW Regulator
  RDV54_RS07215 (RDV54_07215) - 1515998..1517284 (+) 1287 WP_025169748.1 adenylosuccinate synthase -
  RDV54_RS07220 (RDV54_07220) tadA 1517484..1517951 (+) 468 WP_001110112.1 tRNA adenosine(34) deaminase TadA -
  RDV54_RS07230 (RDV54_07230) - 1518138..1518581 (+) 444 WP_000702005.1 dUTP diphosphatase -
  RDV54_RS07235 (RDV54_07235) - 1518541..1519098 (+) 558 WP_000863561.1 histidine phosphatase family protein -
  RDV54_RS07240 (RDV54_07240) radA 1519112..1520473 (+) 1362 WP_078228442.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 77 a.a.        Molecular weight: 9779.36 Da        Isoelectric Point: 6.8760

>NTDB_id=874510 RDV54_RS07210 WP_000941923.1 1515531..1515764(+) (comW) [Streptococcus mitis strain LMG 14557]
MLQSIYDQMMDFYRNIEEEYGMFLGDNFDWEHVHFKFLIYYLVRYRIVSHRDFIVYHYRVAYRLYLEKLIMKQGFVA

Nucleotide


Download         Length: 234 bp        

>NTDB_id=874510 RDV54_RS07210 WP_000941923.1 1515531..1515764(+) (comW) [Streptococcus mitis strain LMG 14557]
ATGCTACAAAGTATTTATGATCAGATGATGGATTTTTATAGAAATATTGAAGAAGAGTATGGTATGTTCTTGGGTGATAA
TTTTGATTGGGAACATGTTCATTTTAAGTTTTTGATTTATTATCTTGTCCGATATCGTATTGTGAGTCATCGGGATTTTA
TTGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGATAATGAAACAGGGTTTTGTTGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis NCTC 12261

100

100

1
  comW Streptococcus mitis SK321

97.403

100

0.974
  comW Streptococcus pneumoniae Rx1

75.325

100

0.753
  comW Streptococcus pneumoniae D39

75.325

100

0.753
  comW Streptococcus pneumoniae R6

75.325

100

0.753
  comW Streptococcus pneumoniae TIGR4

75.325

100

0.753