Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RDV54_RS07240 Genome accession   NZ_CP133471
Coordinates   1519112..1520473 (+) Length   453 a.a.
NCBI ID   WP_078228442.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1514112..1525473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS07210 (RDV54_07210) comW 1515531..1515764 (+) 234 WP_000941923.1 sigma(X)-activator ComW Regulator
  RDV54_RS07215 (RDV54_07215) - 1515998..1517284 (+) 1287 WP_025169748.1 adenylosuccinate synthase -
  RDV54_RS07220 (RDV54_07220) tadA 1517484..1517951 (+) 468 WP_001110112.1 tRNA adenosine(34) deaminase TadA -
  RDV54_RS07230 (RDV54_07230) - 1518138..1518581 (+) 444 WP_000702005.1 dUTP diphosphatase -
  RDV54_RS07235 (RDV54_07235) - 1518541..1519098 (+) 558 WP_000863561.1 histidine phosphatase family protein -
  RDV54_RS07240 (RDV54_07240) radA 1519112..1520473 (+) 1362 WP_078228442.1 DNA repair protein RadA Machinery gene
  RDV54_RS07245 (RDV54_07245) - 1520546..1521043 (+) 498 WP_004236873.1 beta-class carbonic anhydrase -
  RDV54_RS07250 (RDV54_07250) - 1521068..1521883 (+) 816 WP_000742256.1 PrsW family intramembrane metalloprotease -
  RDV54_RS07255 (RDV54_07255) - 1522029..1522997 (+) 969 WP_000010168.1 ribose-phosphate diphosphokinase -
  RDV54_RS07260 (RDV54_07260) - 1523115..1524080 (+) 966 WP_031237278.1 Rpn family recombination-promoting nuclease/putative transposase -
  RDV54_RS07265 (RDV54_07265) - 1524073..1524509 (+) 437 Protein_1407 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49446.93 Da        Isoelectric Point: 6.5137

>NTDB_id=874511 RDV54_RS07240 WP_078228442.1 1519112..1520473(+) (radA) [Streptococcus mitis strain LMG 14557]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRTEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=874511 RDV54_RS07240 WP_078228442.1 1519112..1520473(+) (radA) [Streptococcus mitis strain LMG 14557]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCACCTAAATATCTGGGGCGTTGCCCCAACTG
TGGGTCTTGGTCTTCTTTTGTAGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTGGCTGAGGTGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTA
CTTGGAGGCGGAGTGGTACCGGGAAGTCTCGTCCTCATAGGTGGGGATCCTGGGATTGGGAAATCAACCCTTCTCCTACA
AGTCTCAACTCAGCTGTCTCAAGTTGGGACTGTTCTCTACGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAGCTACGAG
CAGAGCGCTTGGGTGATATTGATAGTGAGTTTTATCTTTATGCAGAGACCAATATGCAGAGTGTTCGAACTGAGGTGGAG
CGCATCCAGCCAGACTTCCTCATCATCGACTCCATTCAGACTATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
TTCTCAAGTGCGTGAGGTGACAGCGGAACTTATGCAGCTGGCCAAAACAAATAACATTGCCATCTTTATCGTAGGACATG
TGACCAAGGAGGGCACTCTAGCTGGTCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGT
CACCATACCTTTCGTATTTTGAGAGCGGTCAAAAACCGGTTTGGCTCCACTAATGAGATTGGGATTTTTGAGATGCAGTC
GGGTGGCTTGGTTGAAGTCCTCAATCCGAGTCAAGTTTTCCTAGAGGAGCGTTTGGATGGGGCGACTGGTTCGTCAATCG
TTGTGACTATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCGACCATGTTTGGAAATGCCAAG
CGTACGACGACAGGACTTGATTTTAATCGTGCGAGTTTGATTATGGCTGTTTTGGAAAAGCGTGCAGGTCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGCGGTGTTAAATTGGATGAACCTGCGATAGACTTAGCTGTTGCGGTTGCTA
TTGCTTCGAGTTATAAAGACAAGCCAACTAATCCTCAGGAATGTTTTGTAGGAGAACTTGGTTTGACGGGAGAGATTCGG
CGCGTGAATCGTATCGAACAACGCATCAATGAAGCTGCTAAACTGGGATTTACTAAGATTTATGTACCTAAGAATTCTTT
GACAGGAATCACTCCGCCTAAGGAAATTCAGGTCATTGGAGTAACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

100

100

1
  radA Streptococcus mitis SK321

99.558

100

0.996
  radA Streptococcus pneumoniae Rx1

99.558

100

0.996
  radA Streptococcus pneumoniae D39

99.558

100

0.996
  radA Streptococcus pneumoniae R6

99.558

100

0.996
  radA Streptococcus pneumoniae TIGR4

99.558

100

0.996
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

100

0.631