Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   WJ054_RS08145 Genome accession   NZ_CP149485
Coordinates   1639997..1640662 (-) Length   221 a.a.
NCBI ID   WP_012767419.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain STG643     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1634997..1645662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ054_RS08135 (WJ054_08115) - 1638271..1639239 (-) 969 Protein_1544 IS30 family transposase -
  WJ054_RS08140 (WJ054_08120) hpf 1639369..1639917 (-) 549 WP_084916484.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  WJ054_RS08145 (WJ054_08125) comFC/cflB 1639997..1640662 (-) 666 WP_012767419.1 ComF family protein Machinery gene
  WJ054_RS08150 (WJ054_08130) comFA/cflA 1640634..1641959 (-) 1326 WP_015017291.1 DEAD/DEAH box helicase Machinery gene
  WJ054_RS08155 (WJ054_08135) - 1642015..1642653 (+) 639 WP_084916482.1 YigZ family protein -
  WJ054_RS08160 (WJ054_08140) cysK 1642757..1643692 (+) 936 WP_084916480.1 cysteine synthase A -
  WJ054_RS08165 (WJ054_08145) - 1643845..1644204 (-) 360 WP_003056775.1 S1 RNA-binding domain-containing protein -
  WJ054_RS08170 (WJ054_08150) - 1644204..1645604 (-) 1401 WP_042357970.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25364.39 Da        Isoelectric Point: 8.7003

>NTDB_id=874341 WJ054_RS08145 WP_012767419.1 1639997..1640662(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
MICLLCQQFSPLPLRITDILFLKPQTTTLCQECQQGFQKISFTSCQTCNAPSQSSPCSDCLEWKVKGYEVNHKSLYQYNA
AMKAYFSQYKFQGDYLLRHVFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTLSELPAKILIIDDIYTTGSTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=874341 WJ054_RS08145 WP_012767419.1 1639997..1640662(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
ATGATATGCCTCCTATGTCAACAATTTAGTCCATTACCCTTGCGAATAACGGATATTCTCTTTTTGAAACCTCAAACAAC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGATAAGCTTCACGAGTTGCCAAACCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGAAAGTCAAAGGATACGAGGTTAATCACAAAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGTCTCTCCACCCTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAGCACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae D39

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae R6

40.271

100

0.403