Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HSX42_RS07565 Genome accession   NZ_CP133461
Coordinates   1483624..1484571 (+) Length   315 a.a.
NCBI ID   WP_008879449.1    Uniprot ID   A0A0Q0Z089
Organism   Geobacillus thermodenitrificans strain K1041     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1478624..1489571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSX42_RS07550 (HSX42_07550) gucD 1479688..1480977 (+) 1290 Protein_1433 alpha-ketoglutaric semialdehyde dehydrogenase GucD -
  HSX42_RS07555 (HSX42_07555) - 1481072..1482739 (-) 1668 WP_172437874.1 IS1634 family transposase -
  HSX42_RS07560 (HSX42_07560) - 1482908..1483084 (+) 177 Protein_1435 aldehyde dehydrogenase family protein -
  HSX42_RS07565 (HSX42_07565) ceuB 1483624..1484571 (+) 948 WP_008879449.1 ABC transporter permease Machinery gene
  HSX42_RS07570 (HSX42_07570) - 1484564..1485514 (+) 951 WP_008879448.1 iron chelate uptake ABC transporter family permease subunit -
  HSX42_RS07575 (HSX42_07575) - 1485508..1486263 (+) 756 WP_008879447.1 ABC transporter ATP-binding protein -
  HSX42_RS07580 (HSX42_07580) - 1486519..1487478 (+) 960 WP_008879446.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34684.55 Da        Isoelectric Point: 9.4613

>NTDB_id=874342 HSX42_RS07565 WP_008879449.1 1483624..1484571(+) (ceuB) [Geobacillus thermodenitrificans strain K1041]
MKKWVLLLFGLSLLSLFVGVHDLSPRALWEGDRDAWEIFLISRLPRLVSIIIAGASVSICGLIMQQLSQNKFVSPTTAGT
MDWARLGLLVSMILFASASPIVKAAIAVLFAFTGTLLFMTVLDRVKYKDSVFIPLVGLMFGNIIGSVTTFLAYKYDLIQS
VSAWLQGDFSVMMQGRYEMLYISVPLMAIAYAYANRFTIAGMGEEMATNLGLRYRSIVYTGLIIVAVTSSIEVLTVGSLP
FLGLIVPNIVTMYYGDHLRKVLPVTALAGALFVLVCDLFGRIVIYPYEIPIGLTVGVIGSGVFLYLLIRRTKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=874342 HSX42_RS07565 WP_008879449.1 1483624..1484571(+) (ceuB) [Geobacillus thermodenitrificans strain K1041]
ATGAAAAAATGGGTGTTGTTGCTTTTTGGATTATCGCTTCTTTCCTTATTTGTCGGGGTGCATGATTTATCCCCCCGTGC
GCTATGGGAGGGAGACCGTGATGCGTGGGAAATTTTCTTGATCAGCCGGTTGCCGCGGCTCGTCAGCATCATCATCGCTG
GGGCGAGCGTCAGCATTTGCGGCTTGATTATGCAACAGCTTAGTCAAAACAAATTCGTGTCGCCGACAACGGCGGGAACG
ATGGACTGGGCGCGGCTCGGGCTATTAGTGTCAATGATTTTGTTTGCCTCGGCCTCGCCGATCGTAAAGGCCGCCATTGC
TGTGTTGTTTGCGTTCACCGGAACATTGTTGTTTATGACGGTATTGGACCGTGTCAAGTATAAAGATTCGGTGTTCATTC
CGCTCGTCGGTCTCATGTTTGGTAATATCATCGGCTCGGTGACGACGTTTTTAGCGTATAAATATGATTTGATCCAATCG
GTTTCCGCTTGGCTGCAAGGCGATTTTTCGGTCATGATGCAAGGACGCTATGAGATGTTATACATTAGCGTCCCACTTAT
GGCGATCGCTTACGCGTACGCCAACCGATTTACCATCGCGGGCATGGGAGAAGAGATGGCCACGAATTTAGGGCTTCGTT
ACCGGTCGATTGTGTATACAGGACTGATCATTGTCGCGGTCACTTCATCGATTGAAGTGTTGACAGTCGGCTCCTTGCCG
TTTTTAGGGTTGATCGTTCCGAATATTGTGACGATGTATTACGGTGATCATTTACGCAAAGTGCTGCCGGTCACTGCGCT
TGCTGGGGCTTTGTTCGTGCTTGTTTGCGATCTGTTTGGTCGGATCGTCATTTATCCATACGAGATTCCGATCGGCTTAA
CGGTCGGGGTGATCGGGAGCGGCGTCTTTTTATATTTGCTTATAAGGAGAACGAAGCAATATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(8-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0Z089

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.318

99.683

0.502