Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q5384_RS23555 Genome accession   NZ_CP133410
Coordinates   4933125..4934645 (+) Length   506 a.a.
NCBI ID   WP_219372530.1    Uniprot ID   -
Organism   Enterobacter ludwigii strain AG32E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4928125..4939645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5384_RS23530 (Q5384_23530) ilvE 4929693..4930622 (-) 930 WP_025202772.1 branched-chain-amino-acid transaminase -
  Q5384_RS23535 (Q5384_23535) ilvM 4930641..4930904 (-) 264 WP_014172166.1 acetolactate synthase 2 small subunit -
  Q5384_RS23540 (Q5384_23540) ilvG 4930901..4932547 (-) 1647 WP_324285081.1 acetolactate synthase 2 catalytic subunit -
  Q5384_RS23545 (Q5384_23545) ilvX 4932550..4932600 (-) 51 WP_102046757.1 peptide IlvX -
  Q5384_RS23550 (Q5384_23550) ilvL 4932687..4932785 (-) 99 WP_001311244.1 ilv operon leader peptide -
  Q5384_RS23555 (Q5384_23555) comM 4933125..4934645 (+) 1521 WP_219372530.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q5384_RS23560 (Q5384_23560) - 4934673..4935011 (-) 339 WP_014172168.1 DUF413 domain-containing protein -
  Q5384_RS23565 (Q5384_23565) hdfR 4935130..4935951 (+) 822 WP_219372531.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55014.01 Da        Isoelectric Point: 7.3481

>NTDB_id=873828 Q5384_RS23555 WP_219372530.1 4933125..4934645(+) (comM) [Enterobacter ludwigii strain AG32E]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNSSRLGAYEFIGELALTGALRGVPGAISGALEAIRAGRQIIVANENGAEVSLIAERGCLLAGHL
QEVCAYLEGQHVLSEPEESGDPLAESPDDLSDIYGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSVSLQKQWRRRPFRSPHHSASLAAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRARAKISYPARFQLVAAMNPSPSGHYQGNHNRSTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQSSARG
ESTVEVRERVIAAQARQYMRQHKLNARLDNAEIRQFCPLKTEDSCWLEDTLTRFGLSIRAWQRLLKVARTIADVEKCPDI
ERRHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=873828 Q5384_RS23555 WP_219372530.1 4933125..4934645(+) (comM) [Enterobacter ludwigii strain AG32E]
ATGTCACTGTCAGTTGTTTATACCCGAGCGGCCATTGGAGTAAAAGCACCGCTTATTTCGGTAGAAGTTCATCTCAGCAA
CGGGCTGCCCGGGCTGACGCTGGTTGGATTGCCGGAGACCACGGTAAAGGAAGCCAGAGATCGGGTGCGCAGTGCGATTA
TTAATAGCGGTTATACCTTTCCGGCAAAGAAAATCACCATCAACCTTGCGCCTGCAGACTTGCCTAAAGAGGGAGGGCGA
TATGATTTACCTATCGCTATAGCGCTCCTCGCCGCCTCTGAGCAGCTTAACAGCAGCAGACTAGGCGCATATGAGTTCAT
CGGTGAACTGGCGCTCACAGGCGCGCTGAGGGGCGTTCCTGGTGCCATCTCGGGTGCGCTGGAGGCCATTCGCGCAGGTC
GACAAATCATTGTTGCCAATGAAAATGGTGCAGAAGTGAGCCTGATAGCCGAGAGAGGATGTCTGCTAGCCGGGCATTTA
CAGGAAGTGTGCGCGTATCTTGAGGGGCAACATGTGCTGTCAGAGCCGGAAGAATCAGGCGATCCCCTGGCAGAAAGCCC
GGACGATCTGAGCGATATTTACGGCCAGGAGCAGGGGAAGCGGGCGCTGGAGATCACCGCTGCCGGCGGACATAACCTGT
TGTTGATTGGCCCACCGGGTACAGGAAAAACGATGCTGGCGAGCAGGTTGAATGGTTTACTGCCTCCACTTAATAACCAT
GAAGCGCTGGAAAGCGCGGCGATATTTAGTCTGGTGAGTTCAGTGTCATTGCAAAAACAGTGGCGACGTCGCCCGTTTCG
CTCTCCGCACCACAGTGCCTCACTGGCGGCCATGGTCGGCGGTGGCTCCATACCAGGGCCGGGAGAGATCTCTCTGGCGC
ACAACGGCATCCTGTTTCTGGATGAACTGCCTGAATTTGAACGCCGCGTTCTGGATGCGCTGAGGGAGCCCATCGAATCG
GGTGAGATCCACATCTCCCGTGCACGCGCCAAAATAAGCTATCCCGCGCGGTTCCAGCTGGTAGCGGCAATGAACCCCAG
CCCATCGGGCCATTATCAGGGAAACCACAATCGCTCCACGCCTGAACAGACGCTGCGCTACCTGGGGAAGTTATCTGGTC
CTTTCCTGGATCGTTTCGATTTGTCGCTGGAAATCCCCTTGCCTCCTCCCGGCCTGCTCAGCCAGAGCAGCGCCAGAGGA
GAGAGTACGGTGGAAGTTCGCGAGCGGGTTATCGCCGCGCAGGCACGACAGTATATGCGTCAACATAAGCTGAATGCCCG
TCTGGATAACGCTGAAATTCGGCAGTTTTGTCCTCTTAAGACTGAAGATTCATGCTGGCTGGAGGATACGTTGACGCGCT
TTGGGCTTTCCATTCGCGCATGGCAGCGTCTTCTAAAAGTCGCCCGCACCATCGCCGATGTGGAAAAGTGCCCTGACATT
GAGAGGCGGCATCTGCAGGAAGCGTTAAGCTATCGTGCGATCGATCGCTTGCTCCTGCACCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.96

99.209

0.595
  comM Vibrio campbellii strain DS40M4

59.722

99.605

0.595
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Haemophilus influenzae Rd KW20

57.957

100

0.583
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443