Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RDI40_RS18345 Genome accession   NZ_CP133409
Coordinates   3768870..3769394 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain LE43E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3763870..3774394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDI40_RS18325 (RDI40_18325) aphA 3764194..3764907 (+) 714 WP_003860292.1 acid phosphatase AphA -
  RDI40_RS18330 (RDI40_18330) - 3765020..3765436 (+) 417 WP_023299095.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RDI40_RS18335 (RDI40_18335) - 3765439..3765792 (+) 354 WP_006810472.1 MmcQ/YjbR family DNA-binding protein -
  RDI40_RS18340 (RDI40_18340) uvrA 3765796..3768618 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  RDI40_RS18345 (RDI40_18345) ssb 3768870..3769394 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RDI40_RS18350 (RDI40_18350) - 3769455..3769736 (-) 282 WP_022646751.1 YjcB family protein -
  RDI40_RS18355 (RDI40_18355) - 3770168..3771568 (+) 1401 WP_032676709.1 sensor domain-containing diguanylate cyclase -
  RDI40_RS18360 (RDI40_18360) - 3771834..3773399 (+) 1566 WP_023299098.1 EAL domain-containing protein -
  RDI40_RS18365 (RDI40_18365) soxS 3773406..3773732 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  RDI40_RS18370 (RDI40_18370) soxR 3773831..3774289 (+) 459 WP_324286120.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=873802 RDI40_RS18345 WP_003860284.1 3768870..3769394(+) (ssb) [Enterobacter hormaechei strain LE43E]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=873802 RDI40_RS18345 WP_003860284.1 3768870..3769394(+) (ssb) [Enterobacter hormaechei strain LE43E]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTAGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAACAGCCTCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCTCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374