Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   WHX55_RS23000 Genome accession   NZ_CP148752
Coordinates   5087734..5088069 (-) Length   111 a.a.
NCBI ID   WP_150758229.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain AB1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5082734..5093069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX55_RS22975 (WHX55_22955) eat 5082924..5084288 (+) 1365 WP_151214620.1 ethanolamine permease -
  WHX55_RS22980 (WHX55_22960) - 5084413..5084580 (+) 168 WP_008017828.1 DUF2897 family protein -
  WHX55_RS22985 (WHX55_22965) - 5084873..5085430 (+) 558 WP_150758226.1 TetR/AcrR family transcriptional regulator -
  WHX55_RS22990 (WHX55_22970) fabF 5085427..5086701 (-) 1275 WP_151214619.1 beta-ketoacyl-ACP synthase II -
  WHX55_RS22995 (WHX55_22975) - 5086734..5087528 (-) 795 WP_150758228.1 SDR family oxidoreductase -
  WHX55_RS23000 (WHX55_22980) comEA/comE1 5087734..5088069 (-) 336 WP_150758229.1 helix-hairpin-helix domain-containing protein Machinery gene
  WHX55_RS23005 (WHX55_22985) - 5088182..5088514 (-) 333 Protein_4531 transposase -
  WHX55_RS23010 (WHX55_22990) - 5088581..5089672 (-) 1092 WP_191624936.1 EpsG family protein -
  WHX55_RS23015 (WHX55_22995) - 5089807..5089953 (-) 147 Protein_4533 dTDP-glucose 4,6-dehydratase -
  WHX55_RS23020 (WHX55_23000) - 5090118..5090453 (-) 336 Protein_4534 MBL fold metallo-hydrolase -
  WHX55_RS23025 (WHX55_23005) - 5090568..5091014 (+) 447 Protein_4535 DDE-type integrase/transposase/recombinase -
  WHX55_RS23030 (WHX55_23010) - 5091199..5091297 (-) 99 Protein_4536 IS3 family transposase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 11802.50 Da        Isoelectric Point: 8.4634

>NTDB_id=873514 WHX55_RS23000 WP_150758229.1 5087734..5088069(-) (comEA/comE1) [Pseudomonas fluorescens strain AB1]
MRTGYFYSLVFALLTSTSVTTIAAPATKPESGNAPLVLEVSPKTQSGKVDLNAADAPTLQRELTGIGEAKAKAIVAYRES
NGPFSSIDELLEVKGIGKAILDKNREKLHVN

Nucleotide


Download         Length: 336 bp        

>NTDB_id=873514 WHX55_RS23000 WP_150758229.1 5087734..5088069(-) (comEA/comE1) [Pseudomonas fluorescens strain AB1]
ATGCGTACTGGCTATTTCTACTCTCTGGTTTTTGCCCTGCTCACCAGCACTTCTGTTACCACAATTGCCGCACCTGCGAC
TAAGCCAGAATCAGGCAACGCGCCTCTGGTGCTGGAGGTTTCCCCTAAGACACAGTCCGGCAAAGTCGATCTCAATGCAG
CCGATGCCCCGACACTGCAGCGCGAGTTGACCGGTATCGGAGAGGCCAAAGCCAAGGCGATTGTTGCTTATCGTGAAAGT
AATGGGCCATTTTCCTCCATAGACGAACTGCTGGAAGTGAAGGGGATAGGTAAAGCGATTCTGGACAAGAACCGCGAGAA
GCTCCACGTGAACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(46-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

42.857

94.595

0.405