Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RCH27_RS01190 Genome accession   NZ_CP133289
Coordinates   259205..260758 (-) Length   517 a.a.
NCBI ID   WP_011793417.1    Uniprot ID   A1TIQ1
Organism   Paracidovorax citrulli strain YDAC2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 254205..265758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCH27_RS01175 (RCH27_01180) - 254648..255634 (-) 987 WP_011793414.1 tripartite tricarboxylate transporter substrate binding protein BugE -
  RCH27_RS01180 (RCH27_01185) - 255946..257769 (+) 1824 WP_041827185.1 sensor histidine kinase -
  RCH27_RS01185 (RCH27_01190) - 257800..259179 (+) 1380 WP_011793416.1 sigma-54-dependent transcriptional regulator -
  RCH27_RS01190 (RCH27_01195) comM 259205..260758 (-) 1554 WP_011793417.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RCH27_RS01195 (RCH27_01200) - 261000..261725 (+) 726 WP_011793418.1 TorF family putative porin -
  RCH27_RS01200 (RCH27_01205) glnK 261778..262116 (+) 339 WP_011793419.1 P-II family nitrogen regulator -
  RCH27_RS01205 (RCH27_01210) - 262169..263605 (+) 1437 WP_041827186.1 ammonium transporter -
  RCH27_RS01210 (RCH27_01215) - 264119..265102 (+) 984 WP_081436418.1 SMP-30/gluconolactonase/LRE family protein -
  RCH27_RS01215 (RCH27_01220) - 265126..265503 (-) 378 WP_011793421.1 hypothetical protein -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 53718.40 Da        Isoelectric Point: 8.2793

>NTDB_id=873312 RCH27_RS01190 WP_011793417.1 259205..260758(-) (comM) [Paracidovorax citrulli strain YDAC2]
MSLALVQSRALLGLQAAAVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALQNAGLEFPHNKKITVNLAPADLPKDSG
RFDLPIALGILAASGQIDGTLLAGHEFAGELSLSGELRPVRGALATSLALRSAGGRARMVLPPGSAEEAALVPGTEVYRA
RHLLDVVARFLPPQAAAGAGAGPDSGTGDGWCRVEGMPPMAAAPADDLADVKGQAAARRALEIAAAGGHGLLMVGPPGSG
KSMLAHRFAGLLPAMSVDEALESAAVASLAGRFTPTAWGARPTAAPHHSCSAVALVGGGSPPRPGEISIAHHGVLFLDEF
PEYARSALEALREPLETGRITIARAARRADFPARFQLVAAMNPCPCGYLGSGQRACRCTPDQIDRYQAKLSGPLLDRIDL
HVEVPALPTDQLLAAAPGEPSASVRERVAAARERALVRQGKPNQALQGREIDVQAGLQDDAARFLQSAAARLGWSARSTH
RTLKVARTIADLAGETSVGPAHVAEAVQYRRVLRQAA

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=873312 RCH27_RS01190 WP_011793417.1 259205..260758(-) (comM) [Paracidovorax citrulli strain YDAC2]
ATGAGTCTTGCCTTGGTGCAGAGCCGCGCGCTGCTGGGCCTGCAGGCCGCAGCCGTCACGGTGGAAGTGCATCTGGCCAA
TGGCCTGCCGAGCTTCACGCTCGTGGGCCTGGCGGACGTGGAAGTGAAGGAGGCGCGCGAGCGCGTGCGCTCGGCGCTGC
AGAACGCGGGGCTGGAGTTCCCCCACAACAAGAAGATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGACTCCGGC
CGCTTCGACCTGCCGATCGCCCTGGGCATCCTGGCCGCCAGCGGCCAGATCGACGGCACGCTGCTGGCCGGCCATGAGTT
CGCGGGCGAACTGTCGCTCTCCGGTGAGCTCCGCCCGGTGCGGGGCGCGCTCGCCACCAGCCTCGCCCTGCGCTCCGCCG
GCGGCCGCGCCCGCATGGTGCTGCCGCCCGGCAGCGCCGAAGAGGCGGCCCTGGTGCCCGGCACCGAGGTGTACCGGGCC
CGGCACCTGCTGGATGTGGTGGCGCGGTTCCTTCCACCCCAGGCCGCGGCCGGCGCCGGGGCCGGCCCCGACAGCGGAAC
CGGGGACGGCTGGTGCCGGGTGGAGGGCATGCCGCCGATGGCCGCAGCGCCCGCCGACGACCTCGCCGACGTGAAGGGCC
AGGCCGCCGCCCGGCGCGCGCTGGAGATCGCCGCAGCAGGCGGCCACGGCCTGCTCATGGTGGGCCCGCCGGGCTCGGGC
AAGTCGATGCTGGCGCACCGGTTCGCGGGCCTGCTGCCGGCGATGTCCGTGGACGAGGCGCTGGAAAGCGCCGCGGTGGC
CAGCCTGGCGGGGCGCTTCACGCCGACCGCATGGGGAGCCAGGCCGACGGCTGCGCCCCATCACTCCTGCAGTGCGGTGG
CCCTGGTGGGAGGCGGCTCACCCCCGCGCCCGGGAGAAATCTCGATCGCCCATCATGGAGTGCTCTTCCTGGACGAATTC
CCCGAATACGCCCGCAGTGCCCTGGAAGCGCTGCGCGAGCCGCTGGAGACGGGCCGCATCACGATCGCGCGGGCCGCACG
CCGCGCGGATTTCCCGGCGCGCTTCCAGCTCGTCGCGGCGATGAACCCCTGCCCCTGCGGCTACCTGGGCTCCGGCCAGC
GCGCCTGCCGCTGCACGCCCGACCAGATCGACCGCTACCAGGCCAAGTTGAGCGGCCCGCTGCTGGACCGCATCGATCTG
CATGTGGAGGTGCCCGCCCTGCCCACGGACCAGTTGCTGGCCGCCGCGCCCGGCGAACCGTCGGCCAGCGTGCGGGAGCG
CGTCGCCGCCGCGCGCGAGCGCGCCCTGGTCCGGCAGGGCAAGCCCAACCAGGCCCTGCAGGGGCGCGAGATCGATGTGC
AGGCCGGACTGCAGGACGATGCCGCCCGGTTCCTGCAGTCCGCAGCCGCCCGGCTGGGATGGTCGGCGCGCAGCACCCAC
CGTACGCTCAAGGTGGCCCGCACCATCGCCGACCTGGCGGGCGAGACATCCGTCGGGCCAGCGCACGTGGCCGAGGCGGT
GCAGTACCGGCGCGTGCTGCGCCAGGCCGCGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(418-510)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(207-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1TIQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.015

100

0.524
  comM Vibrio campbellii strain DS40M4

51.052

100

0.516
  comM Haemophilus influenzae Rd KW20

51.257

100

0.513
  comM Glaesserella parasuis strain SC1401

49.904

100

0.501
  comM Legionella pneumophila str. Paris

46.947

100

0.476
  comM Legionella pneumophila strain ERS1305867

46.947

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.065

100

0.426