Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RB638_RS23030 Genome accession   NZ_CP133284
Coordinates   4699546..4701066 (+) Length   506 a.a.
NCBI ID   WP_000050217.1    Uniprot ID   -
Organism   Salmonella enterica strain TC-177     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4694546..4706066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB638_RS23005 (RB638_23005) ilvE 4696118..4697047 (-) 930 WP_000208531.1 branched-chain-amino-acid transaminase -
  RB638_RS23010 (RB638_23010) ilvM 4697065..4697328 (-) 264 WP_000983260.1 acetolactate synthase 2 small subunit -
  RB638_RS23015 (RB638_23015) ilvG 4697325..4698971 (-) 1647 WP_023235405.1 acetolactate synthase 2 catalytic subunit -
  RB638_RS23020 (RB638_23020) ilvX 4698974..4699024 (-) 51 WP_192930503.1 peptide IlvX -
  RB638_RS23025 (RB638_23025) - 4699111..4699194 (-) 84 WP_031606660.1 IlvGEDA operon leader peptide -
  RB638_RS23030 (RB638_23030) comM 4699546..4701066 (+) 1521 WP_000050217.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RB638_RS23035 (RB638_23035) maoP 4701091..4701429 (-) 339 WP_000840996.1 macrodomain Ori organization protein MaoP -
  RB638_RS23040 (RB638_23040) hdfR 4701536..4702384 (+) 849 WP_001541181.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54999.18 Da        Isoelectric Point: 8.4881

>NTDB_id=873287 RB638_RS23030 WP_000050217.1 4699546..4701066(+) (comM) [Salmonella enterica strain TC-177]
MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVPGAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHL
QTVCAFLEGKHALERPLAQDMASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNE
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEVPLPPPGILSQHASKG
ESSATVKKRVIAAHERQYRRQKKLNARLEGREIQKYCVLHHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELADQI
SRQHLQEAVSYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=873287 RB638_RS23030 WP_000050217.1 4699546..4701066(+) (comM) [Salmonella enterica strain TC-177]
ATGTCACTGGCGATTGTTCATACTCGCGCCGCACTTGGCGTCAATGCGCCGCCTATCACTATAGAGGTGCATATCAGTAA
TGGATTACCGGGATTAACCATGGTTGGCCTACCGGAAACCACGGTAAAAGAGGCGCGTGACCGGGTACGTAGTGCGATTA
TTAATAGCGGATATGAATTTCCGGCTAAAAAAATAACCATTAACCTTGCTCCAGCCGATCTACCGAAAGAGGGTGGAAGG
TATGACCTGCCTATTGCTGTTGCGCTTCTGGCCGCGTCTGAGCAGCTTACAGCGTCGAATCTTGAGGCATATGAGCTGGT
GGGTGAGTTAGCGCTTACAGGCGCATTACGCGGCGTTCCTGGCGCAATATCAAGTGCAACGGAAGCCATCAGGGCCGGCA
GAAATATTATCGTCGCAACAGAGAACGCGGCGGAGGTTGGGCTTATCAGCAAAGAAGGTTGTTTTATCGCCGATCATCTA
CAAACCGTCTGCGCCTTTCTGGAAGGGAAACACGCCCTGGAAAGACCTTTAGCTCAGGATATGGCATCGCCTACCGCAAC
TGCCGATCTTCGCGATGTGATCGGTCAGGAGCAGGGTAAACGCGGCCTGGAGATTACAGCGGCAGGGGGACATAATCTGC
TATTGATCGGCCCGCCGGGTACGGGTAAAACCATGCTGGCCAGTCGACTGAGCGGGATTCTTCCACCATTAAGCAATGAA
GAGGCGTTGGAAAGCGCCGCGATCCTCAGTCTGGTTAATGCCGATACGGTACAAAAACGATGGCAGCAACGTCCCTTTCG
CTCACCTCATCATAGCGCCTCGCTTACTGCTATGGTCGGCGGCGGCGCAATACCCGCCCCGGGAGAGATATCGCTGGCGC
ACAACGGAATTTTGTTCCTTGATGAATTGCCTGAATTTGAGCGACGCACACTGGATGCGCTACGTGAACCTATAGAATCC
GGTCAAATTCATTTATCCCGTACCAGAGCGAAAATAACGTACCCTGCCAGGTTCCAGTTAATCGCCGCAATGAATCCCAG
CCCGACCGGACATTATCAGGGAAACCATAATCGCTGCACGCCAGAACAGACACTACGTTACCTTAATCGGTTGTCAGGCC
CGTTTCTTGATCGTTTTGACCTTTCGCTTGAGGTACCGCTTCCACCGCCCGGGATTCTTAGCCAACACGCCTCAAAGGGT
GAGAGCAGCGCTACGGTAAAAAAGCGGGTCATCGCCGCCCATGAACGGCAGTACCGACGCCAGAAGAAGTTAAACGCGCG
TCTGGAGGGTCGCGAAATCCAAAAATATTGTGTTTTGCATCACGATGACGCTCGCTGGCTTGAAGACACGCTGGTGCATC
TTGGGTTATCCATTCGCGCCTGGCAGCGTTTACTAAAAGTGGCCAGAACCATTGCCGACATAGAACTGGCTGACCAGATC
TCGCGTCAGCATTTGCAGGAGGCGGTAAGCTATCGGGCGATAGACAGGTTGTTAATTCATTTGCAAAAGCTGTTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Glaesserella parasuis strain SC1401

58.35

100

0.587
  comM Vibrio cholerae strain A1552

58.614

99.802

0.585
  comM Vibrio campbellii strain DS40M4

57.143

99.605

0.569
  comM Legionella pneumophila str. Paris

47.485

98.221

0.466
  comM Legionella pneumophila strain ERS1305867

47.485

98.221

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.195

100

0.433