Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RCG23_RS11985 Genome accession   NZ_CP133267
Coordinates   2313846..2314370 (+) Length   174 a.a.
NCBI ID   WP_308179830.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2303193..2330231 2313846..2314370 within 0


Gene organization within MGE regions


Location: 2303193..2330231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG23_RS11930 (RCG23_11930) rsmG 2303193..2303909 (+) 717 WP_308179821.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  RCG23_RS11935 (RCG23_11935) noc 2304048..2304917 (+) 870 WP_308179822.1 nucleoid occlusion protein -
  RCG23_RS11940 (RCG23_11940) - 2305136..2305897 (+) 762 WP_308179823.1 AAA family ATPase -
  RCG23_RS11945 (RCG23_11945) - 2305890..2306741 (+) 852 WP_308179824.1 ParB/RepB/Spo0J family partition protein -
  RCG23_RS11950 (RCG23_11950) - 2306818..2307531 (+) 714 WP_308179825.1 DUF554 domain-containing protein -
  RCG23_RS11955 (RCG23_11955) yyaC 2307601..2308232 (-) 632 Protein_2313 spore protease YyaC -
  RCG23_RS11960 (RCG23_11960) - 2308792..2309660 (+) 869 Protein_2314 mechanosensitive ion channel family protein -
  RCG23_RS11965 (RCG23_11965) - 2309706..2309906 (+) 201 WP_308179826.1 DUF951 domain-containing protein -
  RCG23_RS11970 (RCG23_11970) - 2309983..2311989 (+) 2007 WP_308179827.1 molybdopterin-dependent oxidoreductase -
  RCG23_RS11975 (RCG23_11975) ychF 2312209..2313309 (+) 1101 WP_308179828.1 redox-regulated ATPase YchF -
  RCG23_RS11980 (RCG23_11980) rpsF 2313484..2313771 (+) 288 WP_308179829.1 30S ribosomal protein S6 -
  RCG23_RS11985 (RCG23_11985) ssbA 2313846..2314370 (+) 525 WP_308179830.1 single-stranded DNA-binding protein Machinery gene
  RCG23_RS11990 (RCG23_11990) rpsR 2314422..2314658 (+) 237 WP_090832880.1 30S ribosomal protein S18 -
  RCG23_RS11995 (RCG23_11995) - 2314824..2315768 (+) 945 WP_308179831.1 YybS family protein -
  RCG23_RS12000 (RCG23_12000) - 2315799..2317771 (+) 1973 Protein_2322 DHH family phosphoesterase -
  RCG23_RS12005 (RCG23_12005) rplI 2317768..2318216 (+) 449 Protein_2323 50S ribosomal protein L9 -
  RCG23_RS12010 (RCG23_12010) dnaB 2318390..2319752 (+) 1363 Protein_2324 replicative DNA helicase -
  RCG23_RS12015 (RCG23_12015) - 2319954..2321245 (+) 1292 Protein_2325 adenylosuccinate synthase -
  RCG23_RS12040 (RCG23_12040) - 2323136..2324608 (+) 1473 WP_308179832.1 peptidoglycan DD-metalloendopeptidase family protein -
  RCG23_RS12045 (RCG23_12045) yycF 2324791..2325501 (+) 711 WP_308179833.1 response regulator YycF -
  RCG23_RS12050 (RCG23_12050) walK 2325510..2327332 (+) 1823 Protein_2328 cell wall metabolism sensor histidine kinase WalK -
  RCG23_RS12055 (RCG23_12055) - 2327329..2328651 (+) 1323 WP_308179834.1 two-component system activity regulator YycH -
  RCG23_RS12060 (RCG23_12060) - 2328638..2329432 (+) 795 WP_308179835.1 two-component system regulatory protein YycI -
  RCG23_RS12065 (RCG23_12065) - 2329438..2330231 (+) 794 Protein_2331 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19048.77 Da        Isoelectric Point: 4.8103

>NTDB_id=873058 RCG23_RS11985 WP_308179830.1 2313846..2314370(+) (ssbA) [Neobacillus sp. PS3-34]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRPFSSQSGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQTR
NYEGQDGKRVYVTEVQAESVQFLEPKGSSSGGGRNDNDFYGGGAPREQGNPFGNGGNQNQRQSNNNNNQGYTRVDEDPFA
GNGQIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=873058 RCG23_RS11985 WP_308179830.1 2313846..2314370(+) (ssbA) [Neobacillus sp. PS3-34]
ATGATGAATCGTGTTGTTCTTGTCGGCCGTTTAACAAAGGATCCTGAACTGCGTTACACCCCGAATGGTGTTCCAGTTGC
TACCTTTACTTTAGCAGTTAATCGACCATTTTCTAGTCAATCAGGTGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
GGCGTAAACCTGCTGAGAATGTGGCTAACTTCTTGAAAAAGGGCAGCTTGGCAGGTGTTGATGGCCGTATTCAAACCCGC
AACTATGAAGGACAAGATGGTAAACGTGTTTACGTTACAGAAGTCCAAGCAGAGAGTGTACAGTTCTTAGAACCTAAAGG
CTCGTCTAGTGGCGGTGGAAGAAACGACAACGATTTCTACGGCGGCGGAGCTCCACGTGAGCAAGGCAACCCTTTTGGGA
ACGGCGGGAATCAGAATCAACGTCAATCCAATAATAACAATAATCAAGGTTATACAAGAGTGGATGAAGATCCGTTTGCA
GGTAACGGCCAAATCGATATTTCAGACGATGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.48

100

0.684
  ssb Latilactobacillus sakei subsp. sakei 23K

52.406

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.92

0.385
  ssb Neisseria meningitidis MC58

35.135

100

0.374
  ssb Neisseria gonorrhoeae MS11

34.595

100

0.368