Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RCG18_RS07085 Genome accession   NZ_CP133264
Coordinates   1415898..1416344 (-) Length   148 a.a.
NCBI ID   WP_211142337.1    Uniprot ID   A0A934M365
Organism   Clostridium sp. OS1-26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1410898..1421344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG18_RS07055 (RCG18_07055) - 1411338..1411829 (-) 492 WP_308042136.1 hypothetical protein -
  RCG18_RS07060 (RCG18_07060) - 1411808..1413337 (-) 1530 WP_308040632.1 TrkH family potassium uptake protein -
  RCG18_RS07065 (RCG18_07065) - 1413452..1414111 (-) 660 WP_308040633.1 NAD-binding protein -
  RCG18_RS07070 (RCG18_07070) - 1414108..1414755 (-) 648 WP_308040635.1 TrkA family potassium uptake protein -
  RCG18_RS07075 (RCG18_07075) - 1414777..1415352 (-) 576 WP_308040636.1 response regulator -
  RCG18_RS07080 (RCG18_07080) rpsR 1415606..1415860 (-) 255 WP_308040637.1 30S ribosomal protein S18 -
  RCG18_RS07085 (RCG18_07085) ssbA 1415898..1416344 (-) 447 WP_211142337.1 single-stranded DNA-binding protein Machinery gene
  RCG18_RS07090 (RCG18_07090) rpsF 1416361..1416648 (-) 288 WP_308040638.1 30S ribosomal protein S6 -
  RCG18_RS07095 (RCG18_07095) - 1416755..1416952 (-) 198 WP_308040640.1 DUF951 domain-containing protein -
  RCG18_RS07100 (RCG18_07100) - 1416957..1417847 (-) 891 WP_308040641.1 mechanosensitive ion channel family protein -
  RCG18_RS07105 (RCG18_07105) - 1417921..1418172 (-) 252 WP_308040642.1 DUF3343 domain-containing protein -
  RCG18_RS07110 (RCG18_07110) - 1418502..1419659 (+) 1158 WP_308040644.1 aminotransferase class V-fold PLP-dependent enzyme -
  RCG18_RS07115 (RCG18_07115) ytvI 1419665..1420719 (+) 1055 Protein_1347 sporulation integral membrane protein YtvI -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16108.07 Da        Isoelectric Point: 4.7915

>NTDB_id=872931 RCG18_RS07085 WP_211142337.1 1415898..1416344(-) (ssbA) [Clostridium sp. OS1-26]
MNKVVLIGRLTKDPELKFTPGTGTAVATFTVAVDRKFSKDGQREADFIPVVVWGKQAESTANYMAKGKLIGICGRIQTRS
YDAKDGTKRYVTEVIAEEVQFLEWGSGNKNAMPSFNEGPSEGFGRSQSFDEGAYGADITPVDDGDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=872931 RCG18_RS07085 WP_211142337.1 1415898..1416344(-) (ssbA) [Clostridium sp. OS1-26]
TTGAATAAGGTTGTTTTAATTGGAAGATTAACCAAAGATCCTGAGCTGAAATTTACTCCAGGAACTGGTACAGCTGTTGC
CACCTTTACTGTAGCTGTTGATAGAAAATTTTCTAAAGACGGTCAAAGAGAAGCTGATTTTATCCCTGTTGTTGTATGGG
GAAAACAAGCTGAATCTACAGCTAATTATATGGCTAAGGGAAAACTTATCGGTATTTGTGGCAGAATTCAAACAAGAAGT
TATGATGCCAAGGACGGTACCAAAAGGTACGTTACCGAGGTCATTGCAGAGGAAGTACAATTCCTTGAATGGGGAAGTGG
AAATAAAAATGCAATGCCATCATTTAATGAAGGGCCTTCAGAAGGTTTTGGAAGATCACAATCCTTTGATGAAGGAGCTT
ATGGAGCAGATATTACTCCAGTAGATGATGGAGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.512

100

0.541
  ssb Latilactobacillus sakei subsp. sakei 23K

44.186

87.162

0.385
  ssbB/cilA Streptococcus mitis NCTC 12261

46.61

79.73

0.372
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.763

79.73

0.365
  ssbA Streptococcus mutans UA159

46.552

78.378

0.365