Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RB645_RS23910 Genome accession   NZ_CP133212
Coordinates   4878755..4880275 (+) Length   506 a.a.
NCBI ID   WP_000050215.1    Uniprot ID   A0A3V4SQX5
Organism   Salmonella enterica strain AJM4     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4873755..4885275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB645_RS23885 ilvE 4875312..4876241 (-) 930 WP_000208528.1 branched-chain-amino-acid transaminase -
  RB645_RS23890 ilvM 4876259..4876522 (-) 264 WP_000983260.1 acetolactate synthase 2 small subunit -
  RB645_RS23895 ilvG 4876519..4878165 (-) 1647 WP_001012570.1 acetolactate synthase 2 catalytic subunit -
  RB645_RS23900 ilvX 4878168..4878218 (-) 51 WP_192930503.1 peptide IlvX -
  RB645_RS23905 ilvL 4878305..4878403 (-) 99 WP_001311244.1 ilv operon leader peptide -
  RB645_RS23910 comM 4878755..4880275 (+) 1521 WP_000050215.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RB645_RS23915 maoP 4880300..4880638 (-) 339 WP_000840996.1 macrodomain Ori organization protein MaoP -
  RB645_RS23920 hdfR 4880745..4881593 (+) 849 WP_001541181.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55013.21 Da        Isoelectric Point: 8.4881

>NTDB_id=872505 RB645_RS23910 WP_000050215.1 4878755..4880275(+) (comM) [Salmonella enterica strain AJM4]
MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVPGAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHL
QTVCAFLEGKHALERPLAQDMASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNE
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKG
ESSATVKKRVIAAHERQYRRQKKLNARLEGREIQKYCVLHHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELADQI
SRQHLQEAVSYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=872505 RB645_RS23910 WP_000050215.1 4878755..4880275(+) (comM) [Salmonella enterica strain AJM4]
ATGTCACTGGCGATTGTTCATACCCGCGCCGCACTTGGCGTCAATGCGCCGCCTATCACTATAGAGGTGCATATCAGTAA
TGGATTACCGGGATTAACCATGGTTGGCCTACCGGAAACCACGGTAAAAGAGGCGCGTGACCGGGTACGTAGTGCGATTA
TTAATAGCGGATATGAATTTCCGGCTAAAAAAATAACCATTAACCTTGCTCCAGCCGATCTACCGAAAGAGGGTGGAAGG
TATGACCTGCCTATTGCTGTTGCGCTTCTGGCCGCGTCTGAGCAGCTTACAGCGTCGAATCTTGAGGCATATGAGCTGGT
GGGTGAGTTAGCGCTTACAGGCGCATTACGCGGCGTTCCTGGCGCAATATCAAGTGCAACGGAAGCCATCAGGGCCGGCA
GAAATATTATCGTCGCAACAGAGAACGCGGCGGAGGTTGGGCTTATAAGCAAAGAAGGATGTTTTATCGCCGATCATCTA
CAAACCGTCTGCGCCTTTCTGGAAGGGAAACACGCCCTGGAAAGACCTTTAGCTCAGGATATGGCATCGCCTACCGCAAC
TGCCGATCTTCGCGATGTGATCGGTCAGGAGCAGGGTAAACGCGGCCTGGAGATTACAGCGGCAGGGGGACATAATCTGC
TATTGATCGGCCCGCCGGGTACGGGTAAAACCATGCTGGCCAGTCGACTGAGCGGGATTCTTCCACCATTAAGCAATGAG
GAGGCGTTGGAAAGCGCCGCGATCCTCAGTCTGGTTAATGCCGATACGGTACAAAAACGATGGCAGCAACGCCCCTTTCG
CTCACCTCATCATAGCGCCTCACTTACTGCTATGGTCGGCGGCGGCGCAATACCCGCCCCGGGAGAGATATCGCTGGCGC
ACAACGGAATTTTGTTCCTTGATGAATTGCCTGAATTTGAACGACGCACACTGGATGCGCTACGTGAACCTATAGAATCC
GGTCAAATTCATTTATCCCGTACCAGAGCGAAAATAACGTACCCTGCCAGGTTCCAGTTAATCGCCGCAATGAATCCCAG
CCCGACCGGACATTATCAGGGAAACCATAATCGCTGCACGCCAGAACAGACACTACGTTACCTTAATCGGTTGTCAGGCC
CGTTTCTTGATCGTTTTGACCTTTCGCTTGAGATACCGCTTCCACCGCCCGGGATTCTTAGCCAACACGCCTCAAAGGGT
GAGAGCAGCGCTACGGTAAAAAAGCGGGTCATCGCCGCCCATGAACGGCAGTACCGACGCCAGAAGAAGTTAAACGCGCG
TCTGGAGGGTCGCGAAATCCAAAAATATTGTGTTTTGCATCACGATGACGCCCGCTGGCTTGAAGACACGCTGGTGCATC
TTGGATTATCCATTCGCGCCTGGCAGCGTTTACTAAAAGTTGCCAGAACCATTGCCGACATAGAACTGGCTGACCAGATC
TCGCGTCAGCATTTGCAGGAGGCGGTAAGCTATCGGGCGATAGACAGGTTGTTAATTCATTTGCAAAAGCTGTTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3V4SQX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.317

100

0.589
  comM Vibrio cholerae strain A1552

58.812

99.802

0.587
  comM Glaesserella parasuis strain SC1401

58.153

100

0.585
  comM Vibrio campbellii strain DS40M4

57.341

99.605

0.571
  comM Legionella pneumophila str. Paris

47.686

98.221

0.468
  comM Legionella pneumophila strain ERS1305867

47.686

98.221

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.998

100

0.431