Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QL104_RS30480 Genome accession   NZ_CP133164
Coordinates   6520621..6522114 (+) Length   497 a.a.
NCBI ID   WP_085594252.1    Uniprot ID   -
Organism   Pseudomonas piscis strain 75     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6515621..6527114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL104_RS30450 (QL104_30450) - 6516241..6516942 (+) 702 WP_053133693.1 HAD family hydrolase -
  QL104_RS30455 (QL104_30455) sutA 6517020..6517343 (-) 324 WP_085594254.1 transcriptional regulator SutA -
  QL104_RS30460 (QL104_30460) - 6517445..6517870 (-) 426 WP_022641803.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QL104_RS30465 (QL104_30465) - 6518080..6519417 (-) 1338 WP_031320686.1 ammonium transporter -
  QL104_RS30470 (QL104_30470) glnK 6519453..6519791 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  QL104_RS30475 (QL104_30475) - 6520203..6520463 (+) 261 WP_022641805.1 accessory factor UbiK family protein -
  QL104_RS30480 (QL104_30480) comM 6520621..6522114 (+) 1494 WP_085594252.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QL104_RS30485 (QL104_30485) - 6522119..6522697 (-) 579 WP_085594250.1 TetR/AcrR family transcriptional regulator -
  QL104_RS30490 (QL104_30490) - 6522724..6523737 (+) 1014 WP_397428965.1 ABC transporter six-transmembrane domain-containing protein -
  QL104_RS30495 (QL104_30495) - 6523741..6524709 (-) 969 WP_282879197.1 Ca2+-dependent phosphoinositide-specific phospholipase C -
  QL104_RS31810 - 6524827..6525687 (-) 861 WP_372238142.1 methyl-accepting chemotaxis protein -
  QL104_RS31815 - 6525730..6526803 (-) 1074 Protein_6034 Cache 3/Cache 2 fusion domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52796.73 Da        Isoelectric Point: 7.8634

>NTDB_id=872238 QL104_RS30480 WP_085594252.1 6520621..6522114(+) (comM) [Pseudomonas piscis strain 75]
MSLAIIHSRAQMGVQAPAVSVEVHLANGLPSLTLVGLPETAVKESKDRVRSAILNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASQQLPATALDRVECLGELALSGAVRPVRGVLPAALAARDAGHALLVPRANAEEACLASGLSVIAVDHL
LEAAAHLNGQAPIPACVSQGLPHDRAPYPDLRDVQGQLAAKRALLVAAAGAHNLLFCGPPGTGKTLLASRLPGLLPPLQE
HEALEVAAIQSVSSPAPLEHWPQRPFRQPHHSASSAALVGGGSKPQPGEITMAHHGVLFLDELPEFDRKVLEVLREPMES
GQIVIARARERVQFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNPAPQP
GNDSASAADLVARARNLQLRRQGCTNALLDLPGLARHCRLSTTDERWLEAACENLGLSLRAAHRLLKVARTLADLEQATA
IGREHLAEALHYRHGSG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=872238 QL104_RS30480 WP_085594252.1 6520621..6522114(+) (comM) [Pseudomonas piscis strain 75]
ATGTCCCTGGCCATCATCCACAGCCGCGCCCAGATGGGCGTACAGGCTCCGGCCGTCAGTGTCGAAGTGCACCTGGCCAA
CGGCCTGCCGAGCCTGACCCTGGTGGGGCTGCCCGAAACCGCGGTCAAGGAAAGCAAGGACCGGGTCCGCAGCGCGATCC
TCAACGCCGGCTTCGACTTCCCCGCCCGGCGCATCACCCTCAACCTGGCTCCCGCCGACCTGCCCAAGGACGGTGGCCGC
TTCGACCTGGCGATCGCCCTGGGCATCCTCGCGGCCAGCCAGCAACTACCGGCCACGGCGCTGGATCGCGTCGAGTGCCT
GGGCGAGCTGGCGTTGTCCGGGGCCGTGCGCCCGGTGCGCGGCGTGCTGCCGGCGGCCCTGGCAGCAAGGGATGCCGGCC
ATGCCTTGCTGGTGCCCCGGGCCAATGCCGAGGAAGCCTGCCTGGCCTCGGGCCTGAGCGTGATCGCGGTCGACCATTTG
CTGGAGGCGGCGGCCCATCTCAACGGGCAGGCGCCGATCCCGGCCTGCGTCAGCCAGGGCCTGCCCCATGACCGCGCGCC
CTACCCCGACCTGCGCGACGTCCAGGGCCAGCTGGCCGCCAAGCGGGCCCTGCTGGTGGCTGCGGCCGGGGCCCACAACC
TGCTGTTCTGCGGCCCGCCCGGCACCGGCAAGACCCTGTTGGCCAGCCGCCTGCCCGGCCTGCTGCCACCGCTGCAAGAA
CACGAGGCCCTTGAGGTAGCAGCCATCCAGTCGGTGAGCAGCCCCGCCCCGCTGGAACACTGGCCACAGCGTCCGTTCCG
CCAACCCCACCACTCGGCGTCGAGCGCAGCCCTGGTGGGCGGTGGCTCGAAACCGCAGCCCGGGGAAATCACCATGGCCC
ACCATGGCGTGCTGTTTCTCGACGAGCTACCGGAGTTCGACCGCAAGGTCCTGGAGGTCCTGCGCGAGCCCATGGAATCC
GGGCAGATCGTCATCGCCCGGGCCCGCGAGCGGGTGCAGTTTCCGGCACGCTTCCAGTTGGTGGCGGCGATGAACCCCTG
CCCCTGTGGATACCTGGGCGAACCCAGTGGCCGCTGCCGTTGCACACCGGAGCAGATCCAGCGCTATCGCAACAAGCTCT
CCGGCCCGCTGCTGGATCGCATCGACCTGCACCTGACCGTCGCCCGCGAGGCCACGGCCCTGAACCCCGCGCCGCAACCG
GGCAACGACAGTGCCAGCGCCGCCGACCTGGTGGCCCGTGCGCGCAACCTGCAACTGCGGCGCCAGGGCTGCACCAACGC
CCTGCTCGACCTGCCCGGCCTGGCGCGCCATTGCAGGTTATCCACAACCGACGAGCGCTGGCTGGAAGCAGCCTGCGAGA
ACCTCGGCCTGTCGCTGCGCGCCGCCCACCGCCTGCTCAAGGTGGCCCGGACCCTGGCCGACCTTGAACAGGCCACCGCC
ATCGGCCGCGAGCACCTGGCGGAGGCACTGCACTATCGCCACGGCAGCGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Glaesserella parasuis strain SC1401

54.6

100

0.549
  comM Haemophilus influenzae Rd KW20

54.4

100

0.547
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Legionella pneumophila str. Paris

48.915

100

0.499
  comM Legionella pneumophila strain ERS1305867

48.915

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.422

100

0.449