Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RBH93_RS20540 Genome accession   NZ_CP133079
Coordinates   4448773..4450287 (+) Length   504 a.a.
NCBI ID   WP_307895764.1    Uniprot ID   -
Organism   Aeromonas veronii strain HS1906     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4443773..4455287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH93_RS20525 (RBH93_20525) - 4445510..4446454 (-) 945 WP_069527020.1 branched-chain amino acid transaminase -
  RBH93_RS20530 (RBH93_20530) ilvM 4446467..4446745 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  RBH93_RS20535 (RBH93_20535) ilvG 4446742..4448388 (-) 1647 WP_005339612.1 acetolactate synthase 2 catalytic subunit -
  RBH93_RS20540 (RBH93_20540) comM 4448773..4450287 (+) 1515 WP_307895764.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RBH93_RS20545 (RBH93_20545) - 4450414..4451313 (+) 900 WP_307895765.1 acyltransferase -
  RBH93_RS20550 (RBH93_20550) - 4451320..4452285 (+) 966 WP_307895766.1 acyltransferase -
  RBH93_RS20555 (RBH93_20555) - 4452210..4452716 (-) 507 WP_307895768.1 DUF523 domain-containing protein -
  RBH93_RS20560 (RBH93_20560) - 4452820..4453470 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  RBH93_RS20565 (RBH93_20565) - 4453545..4454180 (+) 636 WP_005357452.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54643.51 Da        Isoelectric Point: 7.4493

>NTDB_id=871678 RBH93_RS20540 WP_307895764.1 4448773..4450287(+) (comM) [Aeromonas veronii strain HS1906]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLFDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
SKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=871678 RBH93_RS20540 WP_307895764.1 4448773..4450287(+) (comM) [Aeromonas veronii strain HS1906]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCATCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGAGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTTCCGAGCAAACACATCACAGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTAGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCTGCAAAATACCTATTCGATCACGAATTTTT
AGGCGAGTTGGCTCTGACCGGCGAAATTCGTCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGTGATGCGGGAC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCCGAAGCGTCCCTCATTCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAGTACGAACTGCCGCTGCCGGATCCCCAAAGCGCGGAGAGCCTGCCAGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGATTGCCCGGCATCTTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCAATCCACTCCATCGGTGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACACCCCACCACAGCGCCTCAGCAGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAAGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATCCGCGATCGGGTGCTGGCAGCGCGAGAGCGGATGCTGAGCCGCAATGGCAAACTCAACAATCT
ACTGGATAGCCGTGAGATAGAGGATATTTGCCGCCTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
AGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACCGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464