Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RBI12_RS01860 Genome accession   NZ_CP133054
Coordinates   393481..394290 (+) Length   269 a.a.
NCBI ID   WP_017481716.1    Uniprot ID   A0AAN4MGD2
Organism   Acinetobacter pittii strain A774     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388481..399290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI12_RS01825 (RBI12_01830) - 389042..389194 (-) 153 WP_107908592.1 hypothetical protein -
  RBI12_RS01830 (RBI12_01835) rpoZ 389233..389511 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  RBI12_RS01835 (RBI12_01840) gmk 389584..390213 (-) 630 WP_005804544.1 guanylate kinase -
  RBI12_RS01840 (RBI12_01845) ispH 390336..391286 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RBI12_RS01845 (RBI12_01850) fimU 391456..391929 (+) 474 WP_017481718.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RBI12_RS01850 (RBI12_01855) pilV 391923..392483 (+) 561 WP_079381023.1 type IV pilus modification protein PilV Machinery gene
  RBI12_RS01855 (RBI12_01860) pilW 392483..393484 (+) 1002 WP_017481717.1 PilW family protein Machinery gene
  RBI12_RS01860 (RBI12_01865) pilX 393481..394290 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RBI12_RS01865 (RBI12_01870) pilY1 394302..398156 (+) 3855 WP_017481715.1 PilC/PilY family type IV pilus protein Machinery gene
  RBI12_RS01870 (RBI12_01875) pilY2 398167..398649 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  RBI12_RS01875 (RBI12_01880) pilE 398646..399071 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28558.38 Da        Isoelectric Point: 7.7238

>NTDB_id=871536 RBI12_RS01860 WP_017481716.1 393481..394290(+) (pilX) [Acinetobacter pittii strain A774]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AANDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSAAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=871536 RBI12_RS01860 WP_017481716.1 393481..394290(+) (pilX) [Acinetobacter pittii strain A774]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCAGGTGCAGAATACAATTTTTGTTATAAGCCTGTTTCTACATCAACAAA
TTTTGCTCAGACTAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAACGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACGCAACGTATTCGGGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTGCAGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907