Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RBI12_RS01845 Genome accession   NZ_CP133054
Coordinates   391456..391929 (+) Length   157 a.a.
NCBI ID   WP_017481718.1    Uniprot ID   A0A9X3QJB9
Organism   Acinetobacter pittii strain A774     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 386456..396929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI12_RS01820 (RBI12_01825) spoT 386918..389023 (-) 2106 WP_017481720.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RBI12_RS01825 (RBI12_01830) - 389042..389194 (-) 153 WP_107908592.1 hypothetical protein -
  RBI12_RS01830 (RBI12_01835) rpoZ 389233..389511 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  RBI12_RS01835 (RBI12_01840) gmk 389584..390213 (-) 630 WP_005804544.1 guanylate kinase -
  RBI12_RS01840 (RBI12_01845) ispH 390336..391286 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RBI12_RS01845 (RBI12_01850) fimU 391456..391929 (+) 474 WP_017481718.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RBI12_RS01850 (RBI12_01855) pilV 391923..392483 (+) 561 WP_079381023.1 type IV pilus modification protein PilV Machinery gene
  RBI12_RS01855 (RBI12_01860) pilW 392483..393484 (+) 1002 WP_017481717.1 PilW family protein Machinery gene
  RBI12_RS01860 (RBI12_01865) pilX 393481..394290 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16925.59 Da        Isoelectric Point: 7.7942

>NTDB_id=871533 RBI12_RS01845 WP_017481718.1 391456..391929(+) (fimU) [Acinetobacter pittii strain A774]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNNPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=871533 RBI12_RS01845 WP_017481718.1 391456..391929(+) (fimU) [Acinetobacter pittii strain A774]
ATGAGGGGAATTATTCCGCAAGATGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATTGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGATGTTTCTATTAATCTGAATTCAACAGCTTTAAATAATCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAACTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACCAATATCACCCAAGACACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879