Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   RBI12_RS01855 Genome accession   NZ_CP133054
Coordinates   392483..393484 (+) Length   333 a.a.
NCBI ID   WP_017481717.1    Uniprot ID   A0A9X3QGF6
Organism   Acinetobacter pittii strain A774     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 387483..398484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI12_RS01825 (RBI12_01830) - 389042..389194 (-) 153 WP_107908592.1 hypothetical protein -
  RBI12_RS01830 (RBI12_01835) rpoZ 389233..389511 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  RBI12_RS01835 (RBI12_01840) gmk 389584..390213 (-) 630 WP_005804544.1 guanylate kinase -
  RBI12_RS01840 (RBI12_01845) ispH 390336..391286 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RBI12_RS01845 (RBI12_01850) fimU 391456..391929 (+) 474 WP_017481718.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RBI12_RS01850 (RBI12_01855) pilV 391923..392483 (+) 561 WP_079381023.1 type IV pilus modification protein PilV Machinery gene
  RBI12_RS01855 (RBI12_01860) pilW 392483..393484 (+) 1002 WP_017481717.1 PilW family protein Machinery gene
  RBI12_RS01860 (RBI12_01865) pilX 393481..394290 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RBI12_RS01865 (RBI12_01870) pilY1 394302..398156 (+) 3855 WP_017481715.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35814.49 Da        Isoelectric Point: 6.6395

>NTDB_id=871535 RBI12_RS01855 WP_017481717.1 392483..393484(+) (pilW) [Acinetobacter pittii strain A774]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNTSNAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSTVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=871535 RBI12_RS01855 WP_017481717.1 392483..393484(+) (pilW) [Acinetobacter pittii strain A774]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTAGTAGCCGCGGCAACTCAATTATTTATTGGTGGACTTCTATCAAGTCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGCTTGGAATATATTGCCCGTGATATACGCCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACGACCCCTTGGGGCGGTGTTGTATTAACTGGTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACCTATATTGCTGACACATTACTTAGTCGTGGTGCAGGTGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACACTTCAAATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACGAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGATTATGCACTTGCATGTGATGCAAATACTCCCTCTACTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

85.285

100

0.853