Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RBI11_RS09970 Genome accession   NZ_CP133052
Coordinates   2083673..2084491 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain A1014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2078673..2089491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI11_RS09935 (RBI11_09960) - 2079255..2079385 (-) 131 Protein_1928 hypothetical protein -
  RBI11_RS09940 (RBI11_09965) rpoZ 2079424..2079702 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RBI11_RS09945 (RBI11_09970) gmk 2079775..2080404 (-) 630 WP_000015937.1 guanylate kinase -
  RBI11_RS09950 (RBI11_09975) ispH 2080527..2081477 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RBI11_RS09955 (RBI11_09980) fimU 2081647..2082120 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RBI11_RS09960 (RBI11_09985) pilV 2082114..2082674 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RBI11_RS09965 (RBI11_09990) pilW 2082675..2083676 (+) 1002 WP_057093627.1 PilW family protein Machinery gene
  RBI11_RS09970 (RBI11_09995) pilX 2083673..2084491 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RBI11_RS09975 (RBI11_10000) pilY1 2084503..2088357 (+) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  RBI11_RS09980 (RBI11_10005) pilY2 2088370..2088852 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  RBI11_RS09985 (RBI11_10010) pilE 2088849..2089274 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=871512 RBI11_RS09970 WP_000149374.1 2083673..2084491(+) (pilX) [Acinetobacter baumannii strain A1014]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=871512 RBI11_RS09970 WP_000149374.1 2083673..2084491(+) (pilX) [Acinetobacter baumannii strain A1014]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCCGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGCGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGCATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993