Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   RBI11_RS09980 Genome accession   NZ_CP133052
Coordinates   2088370..2088852 (+) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A1014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2083370..2093852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI11_RS09970 (RBI11_09995) pilX 2083673..2084491 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RBI11_RS09975 (RBI11_10000) pilY1 2084503..2088357 (+) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  RBI11_RS09980 (RBI11_10005) pilY2 2088370..2088852 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  RBI11_RS09985 (RBI11_10010) pilE 2088849..2089274 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  RBI11_RS09990 (RBI11_10015) rpsP 2089421..2089672 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RBI11_RS09995 (RBI11_10020) rimM 2089692..2090240 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RBI11_RS10000 (RBI11_10025) trmD 2090286..2091026 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RBI11_RS10005 (RBI11_10030) rplS 2091234..2091602 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RBI11_RS10010 (RBI11_10035) - 2091655..2092596 (-) 942 WP_085943440.1 triacylglycerol lipase -
  RBI11_RS10015 (RBI11_10040) - 2092711..2093745 (-) 1035 WP_057093625.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=871514 RBI11_RS09980 WP_001046417.1 2088370..2088852(+) (pilY2) [Acinetobacter baumannii strain A1014]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=871514 RBI11_RS09980 WP_001046417.1 2088370..2088852(+) (pilY2) [Acinetobacter baumannii strain A1014]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444